Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00817 ATGCCAACAGTTTGGTTGTCCTTGAAGAAATCTTTGTACTGCAAATCAGACCCATCAGAAGTCCATGACCCAAAAACCAGGAAGAATTTGGGTTCAATTTTGACAAGAAAAACAGGGGGAGGAGGAAGATCAGGCTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGCGGCACCAGCAAGAGGCATTTCGACAAGCCCCCAAGTTGCAGTCCAAGATCCATTGGCAGCAGCGACTTTCTCAACCCAATAACCCACCAAGTCATTCTCAACAACTCAAGATGCGAGCTCAAAATCACCGGTTTCCATACTGGTTTCCCCCATGATGTGCCTGCCGCCGATCCTCACGCCGGTGCTAACACCGCTTCCACCTTCGTCGGCACTCTGACTCCAGGCACACCCGGCCCCGGTGGCTACCCGTTGAGGCCTTCTTCGAGAAAGTTCCCATTAAGAGACGGATTTGGAAGCTCTCATAAATCTGGCGGCTGCGCTGGCGGCGGCGGAGTGAGGAACAGAGTCTCTTTGGAAACAGAGGATATTGGGAATGGGTTCTGTTCGACGGTTACTTGCCATAAATGTGGCGAGCAGTTCAACAAATGGGATTTCGCTGAAGCACATCATCTTTCTAATCATGCTGTAACAGAGCTTGTGGAAGGAGATTCATCAAGGAAAATCGTGGAGATAATATGCAGAACAAGCTGGTTAAAATCAGAGAATCAAAGTGGTAGAATAGAAAGAGTGGTGAAAGTTCACAATATGCAACGAACACTAGCCCGATTCGAGGAGTATCGTGAAACAGTCAAAATGAAAGCCAGCAAACTCCCAAAGAAGCACCCACGGTGCATTGCAGACGGGAACGAGCTGCTGCGATTCTACGGCACGACAGTCGCGTGCTCGCTTGGCCTCAATGGCTCCTCCAGCCTCTGCATATCGGAGAAATGCTGTGTGTGCAGAATTATACGTAATGGGTTCTCAGCAAAGACAGAGATGAAAGAAGGGATAGGCGTGTTCACAACTTCTACGAGCGCAAGAGCATTCAACTCGATCGAGGTGTCGGGACAGGACGAGGCGATAACGAGGAAGGCGATGATTGTATGCAGGGTGATTGCAGGGAGAGTTCATAAGCCATTGGAGAACATACAGGAAATGGCTGGACAAACGGGGTTTGATTCATTGGCAGGGAAAGTTGGGTTGCATTCAAATATAGAAGAGCTTTATTTGTTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAAGCATGA 1278 48.28 MPTVWLSLKKSLYCKSDPSEVHDPKTRKNLGSILTRKTGGGGRSGCSRSIANLKDVIHGGTSKRHFDKPPSCSPRSIGSSDFLNPITHQVILNNSRCELKITGFHTGFPHDVPAADPHAGANTASTFVGTLTPGTPGPGGYPLRPSSRKFPLRDGFGSSHKSGGCAGGGGVRNRVSLETEDIGNGFCSTVTCHKCGEQFNKWDFAEAHHLSNHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVVKVHNMQRTLARFEEYRETVKMKASKLPKKHPRCIADGNELLRFYGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFNSIEVSGQDEAITRKAMIVCRVIAGRVHKPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKA 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4537298 4539081 + CmaCh16G008170.1 Cma16g00817 311415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00817 425 ProSitePatterns Zinc finger C2H2 type domain signature. 192 213 IPR013087 -
Cma16g00817 425 Gene3D - 215 424 - -
Cma16g00817 425 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 425 - -
Cma16g00817 425 PANTHER - 2 425 - -
Cma16g00817 425 SUPERFAMILY ADP-ribosylation 215 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00511 Cma-Chr3:4962715 Cma16g00817 Cma-Chr16:4537298 2.85E-06 dispersed
Cma09g00919 Cma-Chr9:4582915 Cma16g00817 Cma-Chr16:4537298 2.33E-177 dispersed
Cma15g00699 Cma-Chr15:3342709 Cma16g00817 Cma-Chr16:4537298 2.74E-75 dispersed
Cma16g00817 Cma-Chr16:4537298 Cma04g00922 Cma-Chr4:4757288 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00817 - - csv:101208986 697.582