Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00826 ATGTCTCACAAAGCTTCTCCCGTTTCTGCTTTATCTATGAAGAGCCCAAACACTCTTAAAGTCAAACGTCCTATTGCAAACTTTCATTCAAGCATATGGAAGGACCATTTCCTTTCATTATCATCCGAAGCAATGAAAATAGATGTTGAGATGGAGGAACGAGCTAAACAGTTGAAAGCAGAAGTAAAAAAGATGCTAATGATTTCTAATAGAAATCTTTTGGAGAAGTTAAGTTTAGTTGATTCAATCCAACGGTTAAGTGTATTTTATCATTTTGAAAATGAGATTGATCAAATCTTAGAAAAAATATATGCAAACTATAGAGACTTCACAAGTATTGATGGCTATGATGATCTTCACATTGTCTCTCTTCTATTTCGATTGCTTAGACAACACGGTTATAGAATCCCATGTGACATATTCACAAAATTTGTAGAAAGTAATGGAAAGTTCAAAGAATCATTAGCAGAGGATGCAAGAGGAATTTTAAGTCTATATGAAGCAGCAAATATGAGGGTGCATGGAGAAGATGTCCTTGAGGAAGCTCTCGATTTTAGTGTGAAGCATCTCAAAAATATTATAGCCAACTCAAACTCCAAATTGGGTGCTGAAATTGAGCATGCCTTGAAATGGCCACTAAGAAAAGACCTTCCAAAATTAAAGGCTAGAGAGTACATAACCATGTATCAAGAAGATCCTTCCCATTCTCCAACTTTACTTGCTTTTTCAAAACTGGATTTCAACATACTACAGAAACTTTATCAAAAGGAGTTGAAGGAACTCACAAGGTGGTGGAAAGATTTGAACGTTGAAACAAATTTTCCTTATGCAAGAGATAGAATTGTTGAGTGCTACTTTTGGACATTGGGTGCATACTTTGAACCTCAGTTCAATATTGGAAGGAGAATATTAACCAAAGTAATCGCCATTTCTTCCATTTTAGATGACACATATGATGCCTATGGAACATTTGAAGAACTCCAAGTCTTCACTCGAGCAATTCAAAGATGGGATAGAAGCATGATCAATATACTCCCGGAGTACATGAAGCCTTTATATTTAACAATGTTAAATCTTTATAAAGAAATTAGTAAAGAAATAGGCAAGGATGAATGTTCGCTTCACATTCATTCCACGATTGAAGAAATAAAAAAGCTAGCTGGATCATACTTTGAAGAAGCTAAATGGTTAAACCAAAATTACAAACCAAAATTTAAAGAGTACATGAAATGGGGATTACATAGTTCAGGTTATTCCTTGGTTATCAGCATTTCACTCATTGGTATGGGTGACATAGTAACAAATAAGGTAATTGAATGGTTTTTCAAAAGACCTAAAGTTGTTAAAGCCGCAACAATAATTGCTAGACTCATGGATGACCTCGTTTCCCACAAGTTTGAGCAACAAAGAGAACACGTTGCTTCGGCAGTTGAATGTTACATGGAACAATATGGTTGTTCAGAGAACGAAGCTTGCATTGAACTTCATAAGCAAGTGGTTGATGCATGGAAGGACATAAATGAAGCATGTCTTCATCCAATCGATGTTCCAATGCCTATTCTTATGCGGATTGTGAATGTTTCAAGAGTTATCAACCTTCTTTATACAGATGAGGATGGATACACAAATGCAAATGGTCGAACCAAATTTCTTATCGAATCTCTTCTGGTCAATCCAATGCCATGTTAA 1689 35.46 MSHKASPVSALSMKSPNTLKVKRPIANFHSSIWKDHFLSLSSEAMKIDVEMEERAKQLKAEVKKMLMISNRNLLEKLSLVDSIQRLSVFYHFENEIDQILEKIYANYRDFTSIDGYDDLHIVSLLFRLLRQHGYRIPCDIFTKFVESNGKFKESLAEDARGILSLYEAANMRVHGEDVLEEALDFSVKHLKNIIANSNSKLGAEIEHALKWPLRKDLPKLKAREYITMYQEDPSHSPTLLAFSKLDFNILQKLYQKELKELTRWWKDLNVETNFPYARDRIVECYFWTLGAYFEPQFNIGRRILTKVIAISSILDDTYDAYGTFEELQVFTRAIQRWDRSMINILPEYMKPLYLTMLNLYKEISKEIGKDECSLHIHSTIEEIKKLAGSYFEEAKWLNQNYKPKFKEYMKWGLHSSGYSLVISISLIGMGDIVTNKVIEWFFKRPKVVKAATIIARLMDDLVSHKFEQQREHVASAVECYMEQYGCSENEACIELHKQVVDAWKDINEACLHPIDVPMPILMRIVNVSRVINLLYTDEDGYTNANGRTKFLIESLLVNPMPC 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4630689 4633204 + CmaCh16G008260.1 Cma16g00826 311424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00826 562 Pfam Terpene synthase, N-terminal domain 32 209 IPR001906 GO:0010333|GO:0016829
Cma16g00826 562 SFLD Terpene Cyclase Like 1 C Terminal Domain 237 560 IPR034741 -
Cma16g00826 562 Gene3D Farnesyl Diphosphate Synthase 31 549 IPR008949 -
Cma16g00826 562 Gene3D - 71 235 IPR036965 GO:0010333|GO:0016829
Cma16g00826 562 PANTHER TERPENE SYNTHASE 2-RELATED 16 542 - -
Cma16g00826 562 Pfam Terpene synthase family, metal binding domain 240 505 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cma16g00826 562 SFLD Isoprenoid Synthase Type I 237 560 - -
Cma16g00826 562 PANTHER OS04G0344100 PROTEIN-RELATED 16 542 - -
Cma16g00826 562 CDD Terpene_cyclase_plant_C1 23 559 IPR044814 GO:0010333|GO:0016102
Cma16g00826 562 SUPERFAMILY Terpenoid synthases 235 561 IPR008949 -
Cma16g00826 562 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 235 IPR008930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00826 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 csv:101211452 732.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00822 Cma-Chr16:4576944 Cma16g00826 Cma-Chr16:4630689 6.89E-67 dispersed
Cma16g00823 Cma-Chr16:4577683 Cma16g00826 Cma-Chr16:4630689 5.44E-76 dispersed
Cma16g00824 Cma-Chr16:4579109 Cma16g00826 Cma-Chr16:4630689 1.74E-81 dispersed
Cma16g00826 Cma-Chr16:4630689 Cma16g00829 Cma-Chr16:4685724 0 dispersed
Cma16g01008 Cma-Chr16:7759853 Cma16g00826 Cma-Chr16:4630689 1.45E-10 dispersed
Cma16g01009 Cma-Chr16:7760350 Cma16g00826 Cma-Chr16:4630689 1.82E-37 dispersed
Cma16g00825 Cma-Chr16:4622233 Cma16g00826 Cma-Chr16:4630689 0 tandem
Cma16g00826 Cma-Chr16:4630689 Cma16g00827 Cma-Chr16:4643616 5.46E-37 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00826 Cma_Chr16 FPKM 0.0 0.0 0.0 0.154656 7.365137 7.061958 7.222524 0.0 0.0 0.0