Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00830 ATGGAGGAACAAGATATATTCACAAAATTTATAGAAAATAATGGAAAATTCAAAGAATCACTAACAGAAGATGCAAGAGGAATCTTAAGTCTATATGAAGCGGCAAATATGAGGGTGCATGAAGAAGATATCCTTGACGAAGCTTTTGATTTTAGTGTCAAACATTTAAAATCTATTATAGCCAACTCAAGCCTGAGTTTTACGGCAGAAGTTATCAGTGCCTTGAAATATCCTTTAAGAAAAGCATTTCCAAGATTAAAGGCCAGAGAGTACATATCAATATATCAAGAAGATCCTTCACATTCTGAAACTTTGCTTACTTTCTCAAAACTGGATTTCAACATATTACAGAAACTTCATCCGAAGGAGTTGAATGAAATCGATTTGAAGGTCGAAGAAAGTTTTTCTTTTGCAAGAGATAGAATGGTTGAGTGCTACATTTGGGCATTGGGTGTATACTTCGAACCTCTATTCAGTGCGGGAAGGATAACGTTAACCAAAATTCTTGTCGTTTCTTCAATTTTAGATGATATATATGATGCCTATGGAACCTTTGATGAATTTCAAGTCCTTACTCCAGCAATCCAAAAGTGGGATAAGAGCATGGTTCATGTACTTCCCGAGTACATGAAACCTTTCTATAGTTCAATATTAGATCTTTGTAAAGAAATTAGTAAAGATATGGACAAAGACGAAAGTTCACTCCACATTCATATGGCAAAAGGAAGTTGGTTGAATCCTTCCTGGAAAGAAGCTAAATGGTTAAGCAAGAATTACAAACCAAATTTTAAGGAGCACATGGAATTGGCATTAAAACCCACAGGTTATCCCTTTCTTATAAGTGTTTCTTTATTTGGCATGAGCGACATAGTAACAAGAGACTTATGGGCGATATCGTTTCGTACGAGAGAGAACATGTTGCTTCTCCCGTTGAATGTTACATGGAGCAATATAACTATTAAGAGGAAGAAGTTTGTATTGAACTTCATAAACAAGTGGTTGATGCGTGGAAGGACATAA 1020 35.39 MEEQDIFTKFIENNGKFKESLTEDARGILSLYEAANMRVHEEDILDEAFDFSVKHLKSIIANSSLSFTAEVISALKYPLRKAFPRLKAREYISIYQEDPSHSETLLTFSKLDFNILQKLHPKELNEIDLKVEESFSFARDRMVECYIWALGVYFEPLFSAGRITLTKILVVSSILDDIYDAYGTFDEFQVLTPAIQKWDKSMVHVLPEYMKPFYSSILDLCKEISKDMDKDESSLHIHMAKGSWLNPSWKEAKWLSKNYKPNFKEHMELALKPTGYPFLISVSLFGMSDIVTRDLWAISFRTRENMLLLPLNVTWSNITIKRKKFVLNFINKWLMRGRT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4694253 4696455 + CmaCh16G008300.1 Cma16g00830 311428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00830 339 Pfam Terpene synthase, N-terminal domain 4 74 IPR001906 GO:0010333|GO:0016829
Cma16g00830 339 SUPERFAMILY Terpenoid synthases 101 298 IPR008949 -
Cma16g00830 339 Pfam Terpene synthase family, metal binding domain 106 296 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cma16g00830 339 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 5 296 - -
Cma16g00830 339 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 4 101 IPR008930 -
Cma16g00830 339 Gene3D - 4 100 IPR036965 GO:0010333|GO:0016829
Cma16g00830 339 Gene3D Farnesyl Diphosphate Synthase 101 296 IPR008949 -
Cma16g00830 339 PANTHER OS04G0344100 PROTEIN-RELATED 5 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00830 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - csv:101211452 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00830 Cma-Chr16:4694253 Cma16g00832 Cma-Chr16:4716753 1.25E-138 dispersed
Cma16g00829 Cma-Chr16:4685724 Cma16g00830 Cma-Chr16:4694253 2.12E-157 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g403 . . Bda07g00331 . . . . Bma13g00950 . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0113 . . . . . . Blo07g00921 . Bda05g00743 . . Bpe03g00808 . . . . . . Cma16g00830 . . . . . . . . . . . . . . . . . . Lsi05g00657 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00830 Cma_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0