Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00832 ATGTCTCATCAAACTTCTCCTGTTTCTGCTTCATCTATGAAGAGCCCAAACATTCCTAAAGTCAAACGTCCTATTGCAAACTTTCACCCAAGCATATGGAAGGACCATTTCCTTTCATTATCATCCGAAGCAATGAAAATAGATGGTGAAATGGAGGAACAAGCTAAAGAGTTGAAAGTCAAATTGAAAAAGATGTTATTGATTTGTAATAGAAATCCTCTCAAGATACTAAATCTGGTTGATTCAATTCAGGGGTTAAATGTATCTTATCATTTTGAGAACGAGATTCATCAAATCTTAGAACAAATATATGTGAATTATAGAGAGTTCACAAATATTGATGGCAGTGATGATCTTTATACGATCTCTCTTCTATTTCGACTCCTTAGACAACAAGGTTATAAAATTCCTTGCGACATATTTACGAAATTTGTAGAAAGTAATGGAAAATTCAAAGAATCACTTGCGGAAGATGTAAGAGGAATTTTAAATCTATATGAAGCGGCACATATGAGGATACATGGAGAAGATGTTCTTGAGGAAGCTCTCGATTTTAGTGTCAAACATCTAAAAAATATTATATCCAACTCAAGCTCAATTTTTGTCGCTGAAGTTAAGAGCGCCTTAAAATATCCTCTAAGAAAAGCCATTCCAAGAATGAAGGCAAGAGAGTACATATCGATATATCAAGAAGATCCTTCACATTCTAAAACTTTGCTTACTTTCTCAAAATTGGATTTCAACCTATTACAGAGACTTCATCAAAAGGAGTTGATAGAATCCAAACCAATTTTCCTTATGCTTGTTGAATGCTACTTATGGACGTTGGGAGTCTACTTTGAACCTCAGTTCAATGTTGGAAGAAAAATTTTAACTAAAATAATCGCAATTACTTCAATTTTAGATGATACATATGATGCCTATGGAACATTTGAAGAACTTCAAGTCCTCACTCCGACAATTCGAAGGTGGGATAGAAGCTTGGTCAATGTACTTCCGGAGTACATGAAACCTTTTTATATAGCAATGTTAGATCTTTATAAAAAAATTAGTAAAGAAGTAGACAAGGACGAAAGTTCACTCCACATTCATGTTGCGAAAGAAGAAATGAAAAAACTAGCTGAATCCTACTTTGAAGAAGCGAAATGGTTAAACAAAAATTACAAACCAACTTTCAAGGAGTACATGGAATTGTCATTAAAAACCACAGCTTATTCCTTGCTTACAAGCATTTCACTACTCGGCATGGGCGACATGGTAACAAATGAGGTACTTGAATGGGTTTCTAGAAGACCTAAAATTATCAAAGCCTCAACAATTATTTGTAGATTCTTGGACGACATTGCTTCCCACAAGTTTGAGCAAGAAAGGGAACATATTACTTCTGCGGTTGAATGTTACATGGAGCAATATGGTTGTTCAGAGGAAGAAGCTTGTGTTGAACTTCATAAGCAAATGGTTGATGCATGGAAGGACGTAAATGAAGCATGCCTTCATCCAATTGCTGTTCCAATGCCTATTTTAATGCGGGCAATAAATTTTTCAAGATTTATGAACGTGGTTTATTCGGATGAGGATGGATATACACATTCAAAAGGTAAAACAAAATTTATTATCGAATCTCTTCTTATGAATCCTGTGTCTGGTTGA 1650 34.73 MSHQTSPVSASSMKSPNIPKVKRPIANFHPSIWKDHFLSLSSEAMKIDGEMEEQAKELKVKLKKMLLICNRNPLKILNLVDSIQGLNVSYHFENEIHQILEQIYVNYREFTNIDGSDDLYTISLLFRLLRQQGYKIPCDIFTKFVESNGKFKESLAEDVRGILNLYEAAHMRIHGEDVLEEALDFSVKHLKNIISNSSSIFVAEVKSALKYPLRKAIPRMKAREYISIYQEDPSHSKTLLTFSKLDFNLLQRLHQKELIESKPIFLMLVECYLWTLGVYFEPQFNVGRKILTKIIAITSILDDTYDAYGTFEELQVLTPTIRRWDRSLVNVLPEYMKPFYIAMLDLYKKISKEVDKDESSLHIHVAKEEMKKLAESYFEEAKWLNKNYKPTFKEYMELSLKTTAYSLLTSISLLGMGDMVTNEVLEWVSRRPKIIKASTIICRFLDDIASHKFEQEREHITSAVECYMEQYGCSEEEACVELHKQMVDAWKDVNEACLHPIAVPMPILMRAINFSRFMNVVYSDEDGYTHSKGKTKFIIESLLMNPVSG 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4716753 4719688 + CmaCh16G008320.1 Cma16g00832 311430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00832 549 Gene3D - 71 235 IPR036965 GO:0010333|GO:0016829
Cma16g00832 549 PANTHER OS04G0344100 PROTEIN-RELATED 6 530 - -
Cma16g00832 549 CDD Terpene_cyclase_plant_C1 23 546 IPR044814 GO:0010333|GO:0016102
Cma16g00832 549 Pfam Terpene synthase, N-terminal domain 32 209 IPR001906 GO:0010333|GO:0016829
Cma16g00832 549 Gene3D Farnesyl Diphosphate Synthase 30 536 IPR008949 -
Cma16g00832 549 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 235 IPR008930 -
Cma16g00832 549 Pfam Terpene synthase family, metal binding domain 268 492 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cma16g00832 549 PANTHER TERPENE SYNTHASE 2-RELATED 6 530 - -
Cma16g00832 549 SFLD Terpene Cyclase Like 1 C Terminal Domain 237 547 IPR034741 -
Cma16g00832 549 SUPERFAMILY Terpenoid synthases 235 547 IPR008949 -
Cma16g00832 549 SFLD Isoprenoid Synthase Type I 237 547 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00832 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 csv:101211452 701.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00711 Cma-Chr6:3578583 Cma16g00832 Cma-Chr16:4716753 8.39E-16 dispersed
Cma16g00829 Cma-Chr16:4685724 Cma16g00832 Cma-Chr16:4716753 0 dispersed
Cma16g00830 Cma-Chr16:4694253 Cma16g00832 Cma-Chr16:4716753 1.25E-138 dispersed
Cma16g00832 Cma-Chr16:4716753 Cma20g01093 Cma-Chr20:8418230 2.55E-94 dispersed
Cma16g01010 Cma-Chr16:7761206 Cma16g00832 Cma-Chr16:4716753 3.43E-13 dispersed
Cma16g01012 Cma-Chr16:7775625 Cma16g00832 Cma-Chr16:4716753 1.77E-30 dispersed
Cma16g00831 Cma-Chr16:4696488 Cma16g00832 Cma-Chr16:4716753 1.83E-09 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g404 . . . . . . . Bma13g00917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00832 . . Cpe14g00714 . . . . . . . . . . . . . . . Lsi05g00656 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00832 Cma_Chr16 FPKM 2.934546 4.049347 0.0 0.0 0.328317 0.0 0.273817 0.0 0.0 0.0