Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00836 ATGGCTCCTCACATCCAAATCGCATTTTTCTCCATAGCCCTTTTCGCTCTTCTTTCTAACTCCTCTTCTTCGCCAACAAAAACCAGTGCCAACACCATCAACAAATGGTGCAATACGACGCCGCATCCTAAGGTTTGCATTTTCTTCATGTCACCCCTCAAATCTCCACCGCAAAATCGAATCGAGTTTCGGAAAATGGCGATCAAAACCACATTGGAAGGAGCCGCCAAGGCTCAAAACTACGTGTCCCGATTCGGTCCCACCTGCAAAACCACTCGCCAGAGAGCCGCCTGGACCGATTGCTTCAACCTCTATAACGACACCGTTTTTCAATTAAACCGTACTATCCGGTGTCTCCACGCTGGTACTCGCCTCCGGCATTGTACGGATTTCGATGCGCAAACTTGGCTCAGTTCTGCTCTCACTAACATCGATATGTGCAGCTCCGGCGCGGCGGATCTCAATGTCACGGATTTTATTACTCCCATCAAATGTCAGAATGTTTCCAGGATGATTAGCAATTGTTTGGCCATTAATGGGAGATTCTTAGAGGGAGAGACGAAAAGCAGAACAACCGGAGCAGAGGAATATCAAAATGGGTTTCCGAGATGGGTTTCCAGTGGTGATCGGAAATTGTTGCAGTCGGCGAGGGTTAGAGCTCATTTGGTGGTGGCGAAAGATGGGTCTGGCAAATTCCGGACGGTTCAGGCGGCGATCAACGCCGCCGCGAGGAGGCGTGGGAGAAGCCGCTTTGTAATTTACATTAAGCGTGGGGTTTATAGAGAAAATATTGAAATTGGGAATGATAATGCGAATATAATGCTGGTCGGAGATGGGATTAGATTTACTGTGATTACCAGCGGGAGAAGCGTGGCCGCCGGCTTCACCACCTTCAATTCTGCAACAGCAGGTATTCAAGGTCCGGGATTCATGGCTCGAGGCATAAGGTTTGTGAACACAGCCGGACCAAGAATGGGGCAAGCAGTGGCACTGCGGTCATCATCGGACCTATCGGTGTTCCATCGGTGCAGCTTCGAGGGCTACCAAGACACACTCATGGTGCTGTCACAGAGACAATTCTACAAGCAATGTTACGTATACGGTACAATCGACTTCATTTTTGGGAACGCCGCAGTGGTTCTACAAAACTGCTTGATTTACGTGCGAAGGCCTTTAAAGGGGCAAGTGAACGTGATCACCGCGCAGGGCCGAGAGGACCCATTTCAGAACAGCGGAATTTCGATCCACAACTCGCAAATACGGGCGGCGGCTGATTTGCAGCCCATGATTGGGTCTGTGAAGACGTACTTGGGGCGGCCCTGGAAGAAGTACTCTCGGACTGTCATCATGAGAAGCTATATTGATAGCTTGGTGAGCCCAATGGGTTGGTTGGCGTGGCAAGGTACTAGATTTGCTCAAGATACGTTGTATTATGGGGAGTATCGTAATTTTGGGCCCAGAGCCTCCACCCGGCTTCGAGTCAGATGGCCTGGTTTTCATGCCATTACAACCCGAAATGTGGCCTCTAAGTTCACCGTCCGGAGACTCATCGCCGGCCATACTTGGCTTCCGGCCACTGGAGTTCCCTTCAAGCTTGACCTCTGA 1605 50.34 MAPHIQIAFFSIALFALLSNSSSSPTKTSANTINKWCNTTPHPKVCIFFMSPLKSPPQNRIEFRKMAIKTTLEGAAKAQNYVSRFGPTCKTTRQRAAWTDCFNLYNDTVFQLNRTIRCLHAGTRLRHCTDFDAQTWLSSALTNIDMCSSGAADLNVTDFITPIKCQNVSRMISNCLAINGRFLEGETKSRTTGAEEYQNGFPRWVSSGDRKLLQSARVRAHLVVAKDGSGKFRTVQAAINAAARRRGRSRFVIYIKRGVYRENIEIGNDNANIMLVGDGIRFTVITSGRSVAAGFTTFNSATAGIQGPGFMARGIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYVYGTIDFIFGNAAVVLQNCLIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLQPMIGSVKTYLGRPWKKYSRTVIMRSYIDSLVSPMGWLAWQGTRFAQDTLYYGEYRNFGPRASTRLRVRWPGFHAITTRNVASKFTVRRLIAGHTWLPATGVPFKLDL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4743264 4745095 - CmaCh16G008360.1 Cma16g00836 311434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00836 534 Pfam Plant invertase/pectin methylesterase inhibitor 32 178 IPR006501 GO:0004857
Cma16g00836 534 PANTHER PECTINESTERASE 8 532 - -
Cma16g00836 534 ProSitePatterns Pectinesterase signature 1. 247 266 IPR018040 -
Cma16g00836 534 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 8 532 - -
Cma16g00836 534 Pfam Pectinesterase 222 519 IPR000070 GO:0030599|GO:0042545
Cma16g00836 534 SUPERFAMILY Pectin lyase-like 218 532 IPR011050 -
Cma16g00836 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 179 IPR006501 GO:0004857
Cma16g00836 534 CDD PMEI-like_3 36 182 - -
Cma16g00836 534 SMART PMEI_2 28 178 IPR006501 GO:0004857
Cma16g00836 534 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Cma16g00836 534 Gene3D - 215 534 IPR012334 -
Cma16g00836 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
Cma16g00836 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 182 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00334 Cma-Chr4:1639073 Cma16g00836 Cma-Chr16:4743264 0 dispersed
Cma16g00836 Cma-Chr16:4743264 Cma15g01025 Cma-Chr15:6364490 5.48E-136 dispersed
Cma16g00836 Cma-Chr16:4743264 Cma14g01967 Cma-Chr14:13840381 7.32E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00836 K01051 - csv:101213944 831.632