Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00839 ATGGCGGAGGAGTTTCAGAGTAGTGGAAATTGGTGGGAAGCTTCTAGAAGCCGCTACGAGGCCGAAATATCCCCTTCCTCCTCCGCCGCCGCTGCCGACCCCAATTTGCACATCACCGGCTTAGCCCTGGATTGGAACCAACCCCTCTTTAGGGGCGGCGGCGAGAAGGCGGCGGAGGGCAGTTTCCGGTCTATGCTGCAGCCGGATAATATGAATTTGAATATGCTACAAGAAACAGAACAACAACAACAACAACAACAGATTCAGTGGATGAGATCAGAGAAGGGAATAAACAGAGGATTTTCATTAGATCATCATCATCATCAGCAGCAGCAGTTCACCAGCCCTTCCCACTACAGCTCAAGCGACAGCGCCGTCACCAGTTTCCCAATCGACACCACCACCGCCGCCGCCACTCTGTACGGAAACTCCACAACATTATTACAAGGCTTATTAGGCGGTGAGCAACAGCAAGTCTCAGCAGCAGCAGGTATGAACTTCCCTTACAATTCCCATTACGGGATAAACTCCAACGAGTTCATGTCGGCGGGTGCGTCGTGGTCACCTTCAACAAAACTGCCTCAGTTCTTAAGAAACTCAACGCCACACAGTCAATTACAGTTTTCAAACAACACAGCCTTCTGGAACGCGTCGGACATGAAAGACGTGAGACCCAGTTATGTTCCGACGTCGTATAACACCATACCCGAGAAACCAAAGAATAGTTCAGAGATTGGTGATTCAGTAAGCGTGGGGAAGAAAAGTGGAAATGATGGAAATCAACAACAATCCGGCGGTGGAAAACGGGGACGAAATGAGAGTCCTTCGGCATTGCCAGCGTTTAAGGTAAGGAAAGAGAAGATGGGGGACAGAATCACTGCCCTGCAACAACTGGTATCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTGTCTGAAGCGATTGAATACATAAAGTTCCTCCATGAACAAGTGGGTGTTTTGAGCACTCCATATTTGAAGAGTAGGAGTGATAAATGGAAGGAAGGCGAGGGAGAAGAAGATCTGAGAAGCCGAGGGCTTTGTTTAGTTCCTGTTTCCAGTACATTTCCTGTCACCCACGACACCACCGTCGATTTTTGGACTCCTACCTTCGGAGGAACCTTCAGATAA 1152 48.96 MAEEFQSSGNWWEASRSRYEAEISPSSSAAAADPNLHITGLALDWNQPLFRGGGEKAAEGSFRSMLQPDNMNLNMLQETEQQQQQQQIQWMRSEKGINRGFSLDHHHHQQQQFTSPSHYSSSDSAVTSFPIDTTTAAATLYGNSTTLLQGLLGGEQQQVSAAAGMNFPYNSHYGINSNEFMSAGASWSPSTKLPQFLRNSTPHSQLQFSNNTAFWNASDMKDVRPSYVPTSYNTIPEKPKNSSEIGDSVSVGKKSGNDGNQQQSGGGKRGRNESPSALPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVGVLSTPYLKSRSDKWKEGEGEEDLRSRGLCLVPVSSTFPVTHDTTVDFWTPTFGGTFR 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4812754 4814674 + CmaCh16G008390.1 Cma16g00839 311437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00839 383 MobiDBLite consensus disorder prediction 230 270 - -
Cma16g00839 383 Gene3D - 282 342 IPR036638 GO:0046983
Cma16g00839 383 PANTHER TRANSCRIPTION FACTOR BHLH123 32 373 - -
Cma16g00839 383 MobiDBLite consensus disorder prediction 105 125 - -
Cma16g00839 383 MobiDBLite consensus disorder prediction 107 125 - -
Cma16g00839 383 SMART finulus 283 327 IPR011598 GO:0046983
Cma16g00839 383 MobiDBLite consensus disorder prediction 230 276 - -
Cma16g00839 383 CDD bHLH_AtbHLH_like 278 329 IPR045239 -
Cma16g00839 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Cma16g00839 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 334 IPR036638 GO:0046983
Cma16g00839 383 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00508 Cma-Chr3:4950547 Cma16g00839 Cma-Chr16:4812754 7.05E-59 dispersed
Cma04g00972 Cma-Chr4:4999755 Cma16g00839 Cma-Chr16:4812754 4.74E-31 dispersed
Cma07g00291 Cma-Chr7:1294348 Cma16g00839 Cma-Chr16:4812754 1.59E-52 dispersed
Cma10g00637 Cma-Chr10:2917011 Cma16g00839 Cma-Chr16:4812754 8.77E-39 dispersed
Cma13g00697 Cma-Chr13:6338777 Cma16g00839 Cma-Chr16:4812754 1.71E-43 dispersed
Cma14g01438 Cma-Chr14:11018138 Cma16g00839 Cma-Chr16:4812754 1.02E-19 dispersed
Cma16g00839 Cma-Chr16:4812754 Cma09g00137 Cma-Chr9:595234 1.79E-32 dispersed
Cma19g00571 Cma-Chr19:6420766 Cma16g00839 Cma-Chr16:4812754 6.06E-34 transposed
Cma16g00839 Cma-Chr16:4812754 Cma04g00929 Cma-Chr4:4795265 1.97E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00839 - - cmax:111483288 734.947