Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00844 ATGGAGTCGATTCTGGCCCGAGCCCTCGAGTACACTCTCAAGTACTGGTTAAAATCTTTCTCACGAGACCAGTTCAAATTGCAGGGCCGGTCCGTGCAGCTCTCCAATTTGGATATCAATGGCGATGCTTTGCATTCCAGTATGGGGTTGCCTCCGGCGCTAAATGTTACGACGGCGAGGGTTGGCAAGTTGGAGATTATGCTACCATCGCTGAGTAATGTGCAAGTGGAACCAGTCGTTGTGCAAATAGATAAATTGGATTTAGTTTTAGAGGAGAATCCAGATGCAGATGTGGGTAGAAGCAATAGTTGTAGTCAGACTTCTTCCAGCACCGTGAAGGGTGGTGGTTATGGATTTGCTGATAAGATTGCAGATGGAATGACAGTAGAGGTTCGCACTGTCAATTTGCTACTTGAAACTGGTGGTGGATCGCGACATCAAGGAGGATCAACTTGGGCTTCACCTTTGGCATCTATCACTATACGCAACCTTTTGCTGTATACCACGAATGAAAATTGGCAGGTGGTCAATCTTAAGGAAGCCCGTGATTACTCTGCAAATAAGAAATTTATATATGTTTTCAAGAAACTTGAATGGGAATCTTTGTCAATTGATCTTCTGCCTCATCCGGATATGTTTGATGATGCTACTTTCGCTCGTGCTAAAGAGGGAGCAGTTAGTAGGGATGATGATGGTGCTAAGCGTGTTTTCTTTGGTGGAGAGCGATTTATTGAAGGGATATCTGGTGAAGCTAATATAACATTGCAAAGGACCGAACTAAACAGTCCACTTGGTCTCGAGGTGAATTTACATATTACAGAAGCTGTATGCCCAGCCTTAAGTGAACCAGGACTTCGTGCCTTCCTTCGTTTTTTGACGGGATTGTATGTTTGTCTAAATAGAGGAGATGTAGATATGAAGGCTCAACAGCGTTCAACAGAAGCAGCAGGACGTTCTTTAGTTTCTATTACTGCAGACCATATATTTCTCTGTGTAAAAGACCCTGAATTCCAGCTTGAATTTTTGATGCAGTCACTGTTTTTTTCTCGGGCTAGTGTTAGTGATGGACAAAATGACAATAACTTGACTAAGGTCATGATTGGTGGACTTTTTATGAGGGATACTTTTTCGCGCCCTCCATGCACATTAGTTCAACCAGCCATGCGGGCTGTTACAGATGACTTTTTGCATGTCCCAGAATTTGCTAAGAGCTTTTGCCCACCAATATATCCTTTCAAGGACAAGCAGTGGGGATTAAGTGGAAATGTTCCTTTATTGTGCCTCCACTCTGTGCAGGTCAAGCCTTCTCCAGTCCCCCCATCTTTTGCTACCCAGACAGTCATCCACTGCCAACCTCTCACAATTCATCTTCAGGAAAAATCTTGTTTGAGAATATCATCTTTCCTAGCTGATGGAATAGTTGTGAATCCTGGTTCTGTTTTACCGGATTTCTCCATTAGTTCTATGATACTTTCTCTCAAGGAGTTAGATGTTACTGTTCCAATAGACATAGCCAAGTCTACTGATTATCATAGCAGCTGGGATGGTATCTCTCAAACTGCTTTTGATGGAGCTCGGCTTCATATTAAGAACATGCAATTTTCTGACTCACCTTCTCTGAAGCTTAGACTACTGAATTTGGATAAGGACCCTGCTTGCTTCTGTCTCTGGGAAGGTCAACCAGTTGATGCTAGCCAGAAGAAATGGGCCACCAGCGTGTCTCAGATTAGTTTATCGTTAGAAACATACAACAAAGTGACTAGATCTAAGAGCTCTGATGCTATTTTAGCCTTGTTGAGATGTGTGGAGCTGATAGACGTTTCCATTGAAGTAGCTATGGCCACTGCAGATGGAAGAGCATTAACAGCTGTTCCTCCTCCTGGGGGTGTTGTGAGAGTTGGGGTTTCCTGTCAACAGTGTCTATCAAACACTTCAGTTGATCAATTATTTTTCGTTCTAGATCTTTATGCATACTTCGGAAAAGTTACTGAAAAGATAGCCCTTGCTGGAAAGAAAAATCGACCAAAAGAAGGTATGAGTAACTTGCTGGTTGGAAAGCTTGTGGCTAAGGTACCAAGTGATACTGCTGTCAGTTTATTGGTCAGGAACCTTCAGCTTAGATTTCTGGAGTCTTCTTCCACAATTGTTGAGGAACTGCCACTTGTTCAATTTATTGGCAACGATTTGTTCATCAAAGTTTCTCACAGAATGCTTGGTGGTGCTGTTGCTATTTCATCCACACTACGATGGGATAATGTTGAAGTGGATTGTGTAGACACGGAAGGAAATATTGCATATGGCAATGGAACCGTTTCCACTTCAATTGAAAATGGTTCTCTTATGAATGGGAGTGGATTATCTCAACTAAGAGCAATCCTTTGGGTAGATAACAAAAGGGATAGACTTACAAATTCGTTTCTTGATGTTAGCATCGTGCATGTGATTCCCTTAAATGAGCGGGACATGGAGTGTCATAGTTTGAATGTGTCAGCTTGTATTGCTGGTGTGCGCCTAAGTGGAGGAATGAACTACGCTGAAGCCTTGCTGCATCGATTTGGAATTCTTGGTCCTGATGGGGGTCCTGGAAAGGGTCTGATGAAAGGACTGGAGAATTTACGGGCTGGGCCACTTGCTAAACTTTTTAAAACTTCACCTCTTCTTGCTGACAGTTTCGAAGGAGATGGGAAAGAAGGTCCTCTATTGCAATTAAGAAAGGCAGATGATGTGGACGTTTCCATAGTTCTTAAAAATTGGTTATTTGCACTTGAAGGTGCAGAGGAAATGACAGAAAGATCGTGGCTTTATGATTCTAACAATGTTGGCAGAGAAGAGAGGTGTTGGCACACTTCTTTCCAGATCTTCCGAGTAAAAGCGCAGAGTAGACCAAAGGATCTACTTAATGGCAAAGGAAAATCATGTGGAGCTCAACAATATCCCGTGGAGTTGGTGACAGTCAGCGTAGAAGGCCTGCAAACATTGAAGCCCCAGGTTCAAAAGAACACCCACCATACTGTTTCTCTCCTCAATGGGGTTAATGAAATGGTCGAGCCACTTGGAGGGATAAATCTCGAAGCTCGCATGGTGGTGTCTGAGGATGCTGTTGACGTTGAGATGGCCAACTGGATTATGGAAAACTTGAAGTTCTCTGTCAGGCATCCGATTGAGGCCGTTGTTACAAAGAATGAGCTGCAACATATTGCCTTACTATTCAAGTCGGAAGTTGATTCAATGGGTCGAATTGCTGCTGGAATTCTTAAGCTACTAAAGCTGGAGGGTTCTATTGGTCAAGCCACCTTAGATCAGCTGAACAACCTTGGAAGTGGGAGCATTGACAAGATCTTCGTTCCAGAAAAGCTTAGCAGGGGAGGAAGTAGTGCGGCCAGTTTGGGGATCTCTCCTTCGGCATATTTGATTGGGGCAAGCCCAAGACCAACCGCAGAATCTACAGTGACTTCCCTGGAGCAGGCTGTTCTTGATTCCCAATCTAAATGCACTTCTCTCATGACTGAACTCAGTAGTTCAGATTCGGCATTACATGTTGCAACTATTAAACAACTCTACGAGAAACTTGATAGCATGCAGACTTTACTGTCAAGATTGCGGAATCAAATCTGA 3615 43.35 MESILARALEYTLKYWLKSFSRDQFKLQGRSVQLSNLDINGDALHSSMGLPPALNVTTARVGKLEIMLPSLSNVQVEPVVVQIDKLDLVLEENPDADVGRSNSCSQTSSSTVKGGGYGFADKIADGMTVEVRTVNLLLETGGGSRHQGGSTWASPLASITIRNLLLYTTNENWQVVNLKEARDYSANKKFIYVFKKLEWESLSIDLLPHPDMFDDATFARAKEGAVSRDDDGAKRVFFGGERFIEGISGEANITLQRTELNSPLGLEVNLHITEAVCPALSEPGLRAFLRFLTGLYVCLNRGDVDMKAQQRSTEAAGRSLVSITADHIFLCVKDPEFQLEFLMQSLFFSRASVSDGQNDNNLTKVMIGGLFMRDTFSRPPCTLVQPAMRAVTDDFLHVPEFAKSFCPPIYPFKDKQWGLSGNVPLLCLHSVQVKPSPVPPSFATQTVIHCQPLTIHLQEKSCLRISSFLADGIVVNPGSVLPDFSISSMILSLKELDVTVPIDIAKSTDYHSSWDGISQTAFDGARLHIKNMQFSDSPSLKLRLLNLDKDPACFCLWEGQPVDASQKKWATSVSQISLSLETYNKVTRSKSSDAILALLRCVELIDVSIEVAMATADGRALTAVPPPGGVVRVGVSCQQCLSNTSVDQLFFVLDLYAYFGKVTEKIALAGKKNRPKEGMSNLLVGKLVAKVPSDTAVSLLVRNLQLRFLESSSTIVEELPLVQFIGNDLFIKVSHRMLGGAVAISSTLRWDNVEVDCVDTEGNIAYGNGTVSTSIENGSLMNGSGLSQLRAILWVDNKRDRLTNSFLDVSIVHVIPLNERDMECHSLNVSACIAGVRLSGGMNYAEALLHRFGILGPDGGPGKGLMKGLENLRAGPLAKLFKTSPLLADSFEGDGKEGPLLQLRKADDVDVSIVLKNWLFALEGAEEMTERSWLYDSNNVGREERCWHTSFQIFRVKAQSRPKDLLNGKGKSCGAQQYPVELVTVSVEGLQTLKPQVQKNTHHTVSLLNGVNEMVEPLGGINLEARMVVSEDAVDVEMANWIMENLKFSVRHPIEAVVTKNELQHIALLFKSEVDSMGRIAAGILKLLKLEGSIGQATLDQLNNLGSGSIDKIFVPEKLSRGGSSAASLGISPSAYLIGASPRPTAESTVTSLEQAVLDSQSKCTSLMTELSSSDSALHVATIKQLYEKLDSMQTLLSRLRNQI 1204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4946461 4962306 - CmaCh16G008440.1 Cma16g00844 311442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00844 1204 Coils Coil 1183 1203 - -
Cma16g00844 1204 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1203 - -
Cma16g00844 1204 Pfam N-terminal region of Chorein or VPS13 1 98 IPR026854 -
Cma16g00844 1204 PANTHER UNCHARACTERIZED 1 1203 IPR026728 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00844 - - - cmax:111483259 2318.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00935 Cma16g00844 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00844 Cma-Chr16:4946461 Cma04g00935 Cma-Chr4:4813426 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g431 . . . . Bpe09g00192 . . Bma13g01029 . Cmo04g01004 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1122 Cone15ag1140 . . . . . Blo10g00806 . Bda12g00890 . . . . . . . Cma04g00935 Cma16g00844 Car04g00874 . . Cpe01g00849 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006065 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00844 Cma_Chr16 FPKM 5.457173 6.270916 8.369 8.477291 5.608885 5.162126 5.22106 8.338648 8.097919 9.380068