Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00846 ATGGTATCCCCCGAAACCACCAATTGGCTCTTCGATTATGCATTAATGGATGATATTCCTGTTGCCGATGCCAATTTCTCTGCCCCCACTGCTGGCTTCTCCTGGTCCATGCCACCGCTCAACGCCTCCTCCAATGTCAGCACGGAAATTGAAGGATCATTGTTCGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAAAAGAGGGTTAGAACTGAAACAAGTTGCGCATCTAGCTCAAAAGCGTGTCGGGAGAAGCTGCGGAGAGACAGACTAAATGACAAGTTTCTGGAATTGGGTGCTATTTTGGAGCCCGGAAGACCACCTAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATTGTCGCTCAGTTACGTGGTGAAGCGAAGATGTTGAAAGATTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAGCAGAGGTTAAAAATGGAGAAAGAGAAGTTGGAGCAGCAACTAAAAGACATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGCCAAGCAGCTGGAAACAAGTTGGTTCCTTTCATCAGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCGGTCGACACCTCACAAGATCACGTACTCCGCCCTCCTGTTGCTTAA 705 48.09 MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPPLNASSNVSTEIEGSLFESDGLKEPGSKKRVRTETSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRIVAQLRGEAKMLKDSNTSLSEKIKELKAEKNELRDEKQRLKMEKEKLEQQLKDMNSQPGFLPPAIPATFAAQGQAAGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4970716 4974999 - CmaCh16G008460.1 Cma16g00846 311444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00846 234 PANTHER BHLH TRANSCRIPTION FACTOR 1 234 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma16g00846 234 MobiDBLite consensus disorder prediction 55 78 - -
Cma16g00846 234 CDD bHLH_AtILR3_like 80 155 - -
Cma16g00846 234 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 234 - -
Cma16g00846 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
Cma16g00846 234 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Cma16g00846 234 Coils Coil 123 178 - -
Cma16g00846 234 Gene3D - 69 155 IPR036638 GO:0046983
Cma16g00846 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Cma16g00846 234 SMART finulus 81 132 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00146 Cma-Chr2:697750 Cma16g00846 Cma-Chr16:4970716 4.00E-09 dispersed
Cma03g00685 Cma-Chr3:5646124 Cma16g00846 Cma-Chr16:4970716 1.70E-22 dispersed
Cma06g01333 Cma-Chr6:8764055 Cma16g00846 Cma-Chr16:4970716 9.38E-53 dispersed
Cma13g00706 Cma-Chr13:6387711 Cma16g00846 Cma-Chr16:4970716 3.77E-82 dispersed
Cma14g01806 Cma-Chr14:12966023 Cma16g00846 Cma-Chr16:4970716 8.80E-53 dispersed
Cma16g00846 Cma-Chr16:4970716 Cma20g00638 Cma-Chr20:2971125 4.55E-96 dispersed
Cma01g01152 Cma-Chr1:8424445 Cma16g00846 Cma-Chr16:4970716 9.33E-119 wgd
Cma16g00846 Cma-Chr16:4970716 Cma04g00938 Cma-Chr4:4834656 1.86E-143 wgd
Cma16g00846 Cma-Chr16:4970716 Cma09g00924 Cma-Chr9:4612273 6.93E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36578 PF00010 HLH 1.80E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00846 - - pper:18778871 362.073