Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00850 ATGCAATTTCCAATGCAAGGTTTGATCCACCTTTCCCTCCTTATTTCCCTGCTTCTTTCCCATTTTTCTATCTGTTTCGGACAAGACTACATCATCGGCGACGGAGCCGGTACCGTCGGCGGTGGCGGTGGAGGTGGCGGTGGCGGTGCTGGTGCTGGTGCTGGTGCCGGCGAAGCCGACGCGAAGGGGGCAACACCACCGCCGGAGCAGAACAACTGCAATGGCATATTCTTGTCGTACACTTTCGTTTCGCGCGAGAAGGTGTTTCCCCGACTGAAAAACGTGACGGCTCAGCCATGGGCTTTCAGGTCGGAGGCGATGATTCTAAACGCCGGATCTACGGAGCTTAAGGCATGGAAGATGTTCATCGGCTTTCAAAACCACGAGATCCTGGTGTCGGTCAACGGCGCCGTGGTGATAGATGGGTCGGATTTCCCTGTGATGGTTGGGAACGGAACCACCTTGGCTGGTTACCCAATGACGGATCTGAAAACGTCGATTGAAACTGCCGGCAATATGGATGAGATTCAGGTGAACGTGGAGATGGTCGGAACGATGTTCGGCATCAAGCCTCCTGGTTTTCCAATGCCTAAGACCATTAACCTTGTTAACGATGGGTACAAGTGCCCTGCGCCTCGCCGTCGCGGAAAAAGAACAATGCATATATGCTGCACAAAGGATCCAAAATTCAAGGTGAAACCACCAGAGAAAACCAAATTTTTTCCTCGCCAAGATGGAGATCTCTCACTAACCTATGATGTAATGCAAGCTTATGGAAATAACTATCTTGCTCAAGTTACAATTGACAACAACAATCCCTTGGGCCGTCTGGATCACTGGAACTTAACATGGGAATGGATGAGAGGAGAGTTCATTCATAGCATGAGAGGAGCATATACTTATACAAGAGATATCTCTCAATGCATTTACGGTCCGACAGGCCAATTCTATCAAGATTTCGACTTCACCGGAGTCATGAGTTGTGATAAGAGGCCAGTGATCGCAGATCTCCCGGTGGAACGAAAGGACGATGACAAGATCGGAAAGTTGCCATATTGTTGTAGGAATGGAACTTTGTTACCAACCATGATGGATGAAAGCAAAGCCAGGTCTATTTTTCAACTACAAGTCTTTAAGCTTCCACCAGACATGAACAGAACAGCTCTTACTCCACCACAAAAATGGAAGATCACCGGCATTCTCAACCCGAAATACGTATGCGGGCCACCGCTCCGAGTCGATCCTACCGAGTTTCCAGACCTGAGTGGGCTTCATTCAACAAGTACAGCAATTGCAAGTTGGCAAGTTGTGTGCAACATTACAAGGCCAAAGATGAAACAATCAAAATGCTGTGTTTCATTTTCAGCATATTATAATGACTCTGTGATTCCGTGTAATACTTGTGCATGTGGGTGTGAAGACATTGATACTGATACTTGCAATCCAAATGCAAAGGCAATGATGCTACCTCCAGAAGCTCTTTTGGTGCCATTTCATAACAGGACAGCCAAGGCAAGAGCTTGGGCTAGAATCAAGCGCTACCCAAATCCTAAAAAGTTGCCTTGTCCTGATAACTGTGGTGTTAGCTTGAATTGGCATATTAACTCAGATTATGCCGGTGGATGGACTGCAAGACTAACACTTTTCAACTGGGAAGATTACCCATTTGCGGATTGGTTCACTGCTGTTCAGTTGGACAAGGCCGGCCGTGGCTATGAAAACGTTTATTCCTTCAATGGCACCCTGCTTCCCAACCTCAAGAACACCATCTTCCTTCAAGGCTTGCCTGGTTTAACATACTTGATGGGGGAGGTCAATGGGACTCATCCTGAAGCCGACCCAAGAATTCCAGGGAAGCAGCAATCTGTGATTTCTTTCAACAAGAAGGGCATTCACGACTTCGACATACTACTCGGTGATGGTTTCCCGAATAAAGTTATTTTCAACGGCGAAGAATGTTCACTTCCGAGTGAAATTCCCCTGGCAAGTTCAGGCCAACGTTCCAGCCATGCTCTTATGCCAATCATCTGCGTCTTAGCCATTACTTTCATGCATATCACACATCGCATACATTGA 2076 47.25 MQFPMQGLIHLSLLISLLLSHFSICFGQDYIIGDGAGTVGGGGGGGGGGAGAGAGAGEADAKGATPPPEQNNCNGIFLSYTFVSREKVFPRLKNVTAQPWAFRSEAMILNAGSTELKAWKMFIGFQNHEILVSVNGAVVIDGSDFPVMVGNGTTLAGYPMTDLKTSIETAGNMDEIQVNVEMVGTMFGIKPPGFPMPKTINLVNDGYKCPAPRRRGKRTMHICCTKDPKFKVKPPEKTKFFPRQDGDLSLTYDVMQAYGNNYLAQVTIDNNNPLGRLDHWNLTWEWMRGEFIHSMRGAYTYTRDISQCIYGPTGQFYQDFDFTGVMSCDKRPVIADLPVERKDDDKIGKLPYCCRNGTLLPTMMDESKARSIFQLQVFKLPPDMNRTALTPPQKWKITGILNPKYVCGPPLRVDPTEFPDLSGLHSTSTAIASWQVVCNITRPKMKQSKCCVSFSAYYNDSVIPCNTCACGCEDIDTDTCNPNAKAMMLPPEALLVPFHNRTAKARAWARIKRYPNPKKLPCPDNCGVSLNWHINSDYAGGWTARLTLFNWEDYPFADWFTAVQLDKAGRGYENVYSFNGTLLPNLKNTIFLQGLPGLTYLMGEVNGTHPEADPRIPGKQQSVISFNKKGIHDFDILLGDGFPNKVIFNGEECSLPSEIPLASSGQRSSHALMPIICVLAITFMHITHRIH 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5020925 5024291 + CmaCh16G008500.1 Cma16g00850 311448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00850 691 MobiDBLite consensus disorder prediction 47 68 - -
Cma16g00850 691 PANTHER COBRA-LIKE PROTEIN 7 13 690 - -
Cma16g00850 691 Pfam COBRA-like protein 262 441 IPR006918 GO:0010215|GO:0031225
Cma16g00850 691 PANTHER COBRA-LIKE PROTEIN 10 13 690 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00942 Cma16g00850 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01550 Cma-Chr6:9706162 Cma16g00850 Cma-Chr16:5020925 0 dispersed
Cma14g01601 Cma-Chr14:12039793 Cma16g00850 Cma-Chr16:5020925 0 dispersed
Cma16g00850 Cma-Chr16:5020925 Cma13g01062 Cma-Chr13:8051454 8.08E-30 dispersed
Cma16g00850 Cma-Chr16:5020925 Cma04g00942 Cma-Chr4:4844817 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00850 - - csv:101216608 1136.71