Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00851 ATGTGGAGGGACGCTGGAGCTCCTGCTGATTCTTTCTATGAGGTTCGCCCTGAGTGCACCGATGTTCCCAAAACCCGCTTCAAGATCAGGGCTGGGAAGACCTTGAGTGTTAGAAAATGGCAAGGAGCATTCAATCCCGAAGGCCAACTGGACATTGCGAAGACTCTAAATCGCATTCATCGTGGGGGGATCCATCCTTCAATCAGAGGAGAAGTGTGGGAGTTTCTTCTTGGTTGTTATGATCCTACCAGCACCTATGAGGAAAGAGAAGAGATTCGCCAGCGTCGAAGGATACAGTATGCCACGTTTAAGGAAGACTGTCGACAGATGTTTCCTGTCGTTGGAAGTGGTAGATACATCACAGCTCCTGTAATCACAGAGGATGGTACGCCTATTCATGATCCGCTTGTACTTTTGGAAACAAATCCAGGGAGTGGTCCGCTTATACCCCAAGATACTGCCGTTGCTGTTGCCAATGCTGTTTCCGATGCTGTTACCGATGCTGTTTCCGATGCTGTTTCCGACGCTGTTTCCGATGCTGATGCTGTTGCCAATCCTGATGCTGTTGCTGTTGCCAATCCTGATGCTGTTGCCAACGCTGATGCCGATGCCAATGCTATTGCCGATGCTGTTGCTGCTGTTGCCGATGCTGTTGCTGCTGTTGCCGATGCTGTTGCCAATGCTGATGCTGATGCTGATGCTGATGCTGATGCTGATGCTGATGCTGATGCCGATGCTGACGCTGATGCTGAAGCTGATGCCGATGCTGACGCTGATGCTGAAGCTGATGCTGATGCTGATGCTGTTGTCGATGAGGTTGCCGATGCCGATGCTGTTGCCGATGCCGATGCTGTTGCCGATACTGATGTTGTTGCTGTTGCTGATGCCGTTGCCGATGCTGTTGCTGTTGCCGATGCCGATGCCGATGCTGTTGCCGAGGCCGATGCCGATGTCGATGCCGATGCCGATGCCGATGCCAATGCCGATGCTGTTGCTGAGGCTGATGCCGATGCCGATGCCGATGCCAATGCCAATGCCAATGCTGATGCCAATGCTGATGCCGATGCCAATGCCAATGCCAATGCTGATGCTGATCCGAATGTTCCACAATCAAATTCACAATCAAATTCTTCTAATAGTATGGATCCTGTGACCGATCCAAAAATAATTCAGTGGATGCTTACTTTACATCAGATAGGTCTTGATGTGGTTCGGACTGACAGAACATTGGTGTTCTATGAAAAGCAAGAAAACTTGTCGAAACTTTGGGATATTCTTGCTGTTTATGCTTGGATCGATAAAGATGTTGGCTACTGTCAAGGAATGAGTGATCTTTGTTCCCCCATGATAATGCTTCTCGAGGATGAAGGCGATGCGTTTTGGTGCTTTGAACGTTTGATGCGCAGATTGCGAGGGAACTTCCGATGCACGGATAGCTCTGTTGGTGTGGAGACTCAACTCAGTAATCTGGCTGCTATCACGCAAGTGATTGATCCAAAGCTTCATCAACACTTGGAGACACTTGGTGGTGGAGATTATCTTTTCGCTTTCAGGATGCTTATGGTTTTGTTTCGTCGAGAGTTTTCGTTTTGCGATTCTTTGTATCTCTGGGAGATGATGTGGGCACTGGAATATGATCCTGATCAGTTCACAGTGTATGAAGAACCTGATGTATGCAGTGATAAAGGCGATGGATCGAAAGGAAAAGCAAAAGCGATACGTCAATGCGGGAAATATGAGAGGGAGAACTTGAAAGCAAAGAACTCGCAAGCTCCTCTTCCAATCTCTGTTTTCCTTGTTGCTAGTGTGTTGAAAGATAAGAGCACAAAGCTGCTTACAGAAGCTCGGGGTCTCGACGATGTTGTGAAGATATTGAACGACATGACTGGAAATCTGGATGCCAAGAAAGCATGCACTGGAGCAATGAAGCTTCACAAGAAATATCTAAAGAAGGCCAAGAAGCCATAG 1968 48.07 MWRDAGAPADSFYEVRPECTDVPKTRFKIRAGKTLSVRKWQGAFNPEGQLDIAKTLNRIHRGGIHPSIRGEVWEFLLGCYDPTSTYEEREEIRQRRRIQYATFKEDCRQMFPVVGSGRYITAPVITEDGTPIHDPLVLLETNPGSGPLIPQDTAVAVANAVSDAVTDAVSDAVSDAVSDADAVANPDAVAVANPDAVANADADANAIADAVAAVADAVAAVADAVANADADADADADADADADADADADAEADADADADAEADADADAVVDEVADADAVADADAVADTDVVAVADAVADAVAVADADADAVAEADADVDADADADANADAVAEADADADADANANANADANADADANANANADADPNVPQSNSQSNSSNSMDPVTDPKIIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIMLLEDEGDAFWCFERLMRRLRGNFRCTDSSVGVETQLSNLAAITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDQFTVYEEPDVCSDKGDGSKGKAKAIRQCGKYERENLKAKNSQAPLPISVFLVASVLKDKSTKLLTEARGLDDVVKILNDMTGNLDAKKACTGAMKLHKKYLKKAKKP 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5035628 5039683 - CmaCh16G008510.1 Cma16g00851 311449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00851 655 MobiDBLite consensus disorder prediction 322 336 - -
Cma16g00851 655 MobiDBLite consensus disorder prediction 357 383 - -
Cma16g00851 655 Gene3D - 480 654 - -
Cma16g00851 655 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 482 648 IPR035969 -
Cma16g00851 655 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 128 - -
Cma16g00851 655 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 363 654 - -
Cma16g00851 655 ProSiteProfiles TBC/rab GAP domain profile. 63 544 IPR000195 -
Cma16g00851 655 MobiDBLite consensus disorder prediction 322 342 - -
Cma16g00851 655 PANTHER - 1 128 - -
Cma16g00851 655 PANTHER - 363 654 - -
Cma16g00851 655 MobiDBLite consensus disorder prediction 230 265 - -
Cma16g00851 655 MobiDBLite consensus disorder prediction 363 383 - -
Cma16g00851 655 Pfam Rab-GTPase-TBC domain 372 542 IPR000195 -
Cma16g00851 655 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 374 474 - -
Cma16g00851 655 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 47 504 IPR035969 -
Cma16g00851 655 SMART tbc_4 352 567 IPR000195 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00851 - - - cmax:111483266 546.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01140 Cma-Chr2:6735836 Cma16g00851 Cma-Chr16:5035628 1.83E-08 dispersed
Cma05g01276 Cma-Chr5:9733498 Cma16g00851 Cma-Chr16:5035628 2.14E-31 dispersed
Cma06g01703 Cma-Chr6:10470066 Cma16g00851 Cma-Chr16:5035628 1.19E-12 dispersed
Cma08g00248 Cma-Chr8:1398435 Cma16g00851 Cma-Chr16:5035628 3.85E-44 dispersed
Cma15g01009 Cma-Chr15:6083930 Cma16g00851 Cma-Chr16:5035628 4.76E-10 dispersed
Cma16g00027 Cma-Chr16:127988 Cma16g00851 Cma-Chr16:5035628 5.96E-09 dispersed
Cma16g00851 Cma-Chr16:5035628 Cma18g01336 Cma-Chr18:10182682 2.62E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g459 . . . . Bpe09g00186 . Bma10g00537 Bma13g01036 Cmo16g00908 . . . . . . . . . . . . . . . Cla10g00525 Cam10g0520 Cec10g0537 Cco10g0527 Clacu10g0542 Cmu10g1368 Cre10g0770 Cone6ag0083 Cone9ag0098 . . Lsi02g01909 Csa03g00532 . Cme06g02277 . Blo10g00812 Bda05g00732 Bda12g00897 . Bpe03g00801 . . Sed07g1928 . . . Cma16g00851 . Car16g00853 . Cpe01g00856 Bhi11g00647 Tan01g1682 Cmetu06g1724 . . Mch10g1229 . . . . . . . . Lsi05g00620 . . Cme01g01052
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004197 2 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00851 Cma_Chr16 FPKM 14.919949 12.926106 4.718331 4.574418 10.090314 12.908339 9.764045 4.132846 4.55579 4.150464