Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00853 ATGATCTCTTCGTTCACTCAATCTGCAAAACCCATTAATGGGTCTCACGTCGTTCACCGCCGGAGCTCTCCGGCGCCAATCCGGCCGTTTTCTTGCCCACCTCCATTGCCGGCGCTAAAGCCCCAAGGCTTCGTTCTCTGTATGAAAAATGCCCTTCATATCTCTTCGGTTTCTAATTTCGGGCCACTGAGAACCCGGAAGAGTGATTTGGTTACGAGGAAAGCCTACGAGGCTGACCGATCGCACCCGATTGAGTCGAACGTTGAACTGACGGTAGCCGAAGCGCGAACAGAGGCGGCGAAGAAAGTGAAGATCGGACTGTATTTCGCTCTCTGGTGGGGTTTGAATGTCGTGTTCAACATTTACAACAAGAAGGTTTTGAATGCGTTTCCATATCCATGGCTAACCTCCACGCTTTCCCTCGCTGTTGGCTCTCTCATCATGCTTGTCTCTTGGATGACAAGGATCGCCGACGCACCCAACACCGATTTTGAGTTCTGGAAATCTTTGTTCCCTGTTGCTGTGGCCCATACGATTGGGCATGTAGCGGCCACAGTGAGCATGTCAAAGGTTGCTGTCTCATTCACTCATATCATCAAGAGTGGTGAGCCTGCATTTAGTGTATTGGTTTCAAGGTTCCTGTTGGGTGAGACTTTCCCTGTTCCTGTCTACCTTTCTCTTCTACCGATCATTGGCGGTTGCGCGCTTGCTGCCGTGACCGAGCTTAACTTCAACATGACTGGATTCATGGGAGCTATGATATCAAACTTGGCATTTGTGTTCAGAAACATATTTTCCAAGAAAGGCATGAAGGGGAAGGCTGTTAGCGGGATGAACTACTACGCCTGTTTGTCTATTCTGTCCCTTTTGATTCTTACCCCATTTGCTATTGCTGTCGAAGGACCGCAGATGTGGGCTGCAGGATGGAAAACTGCTGTCTCTCAGAATGGACCTAACTTTGTTTGGTGGGTAGCAGCTCAAAGTGTGTTCTATCATCTCTATAACCAAGTATCCTACATGTCTCTGGACGAAATTTCTCCCTTGACATTCAGCATTGGTAACACCATGAAACGTATATCGGTCATAGTTTCTGCAATCATCATCTTCCGCACACCTGTCCAACCCGTCAATGCTCTCGGAGCTGCAATCGCTGTTCTCGGGACCTTCTTATATTCACAGGCAAAACAATGA 1191 48.36 MISSFTQSAKPINGSHVVHRRSSPAPIRPFSCPPPLPALKPQGFVLCMKNALHISSVSNFGPLRTRKSDLVTRKAYEADRSHPIESNVELTVAEARTEAAKKVKIGLYFALWWGLNVVFNIYNKKVLNAFPYPWLTSTLSLAVGSLIMLVSWMTRIADAPNTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKKGMKGKAVSGMNYYACLSILSLLILTPFAIAVEGPQMWAAGWKTAVSQNGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPVQPVNALGAAIAVLGTFLYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5052238 5055514 + CmaCh16G008530.1 Cma16g00853 311451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00853 396 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Cma16g00853 396 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC-LIKE 29 396 - -
Cma16g00853 396 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cma16g00853 396 MobiDBLite consensus disorder prediction 1 21 - -
Cma16g00853 396 PANTHER SOLUTE CARRIER FAMILY 35 29 396 - -
Cma16g00853 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 239 - -
Cma16g00853 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 295 393 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00938 Cma16g00853 CCT
Cma01g01142 Cma16g00853 CCT
Cma09g00938 Cma16g00853 ECH
Cma01g01142 Cma16g00853 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00528 Cma-Chr3:5032836 Cma16g00853 Cma-Chr16:5052238 0 dispersed
Cma07g00303 Cma-Chr7:1339664 Cma16g00853 Cma-Chr16:5052238 0 dispersed
Cma16g00853 Cma-Chr16:5052238 Cma18g01109 Cma-Chr18:9049595 1.82E-75 dispersed
Cma01g01142 Cma-Chr1:8353848 Cma16g00853 Cma-Chr16:5052238 0 wgd
Cma16g00853 Cma-Chr16:5052238 Cma09g00938 Cma-Chr9:4699608 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00853 K15283 - csv:101216838 706.057