Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00856 ATGAATTGCTTTCAATGTTGTATGTCAGAGGAGAAAGTCAAAAGGAAATCTTCCAAAAAGAGCGTTAAGGAGCATCAGGAGCCAAAAGCTCTATCCTCATTTGCCAACATTTCCTTTAAATCTGATAACAGTCGGCGAAGGTACATAACTGAGGAGATAAAGAAGTTAGGAAAAGGAAACATCTCTGCTCAAGTTTTTTCATTCGGTGAGCTATCTACTGCTACGAATAACTTCAGCCAAGACAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAGGGCATCCTTGAAGGCACAAACCAAGTAACGGCCGTGAAGCAGCTTGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCTAACCTTGTGAATTTGGTTGGGTATTGTGCTGATGGAGATCAGAGGATTTTGGTTTACGAGTGCATGGCTAACGGTTCCTTGGAGGATCATCTTCTTGATATACCGCCAGATAAGCAGTGTCTGGACTGGAAGACGAGGATGAAAATTGCCGAAGGAGCGGCAAAAGGACTTGAATACTTGCATGAAACCGCCAGTCCGCCCGTGATATACCGTGATTTCAAAGCTTCAAACATATTGTTGGATGAGGAATTCAATTCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTGGGTCCTACTGGGGATAAATCTCATGTTTCCACTAGGGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCGCTTACGGGACAATTGACAACAAAATCAGATGTCTACAGCTTCGGTGTCGTGTTTCTGGAGATTATAACTGGAAGACGGGTTATAGACAACGCTAGACCAACAGCAGAACAAAATTTAATTACTTGGGCACAACCACTATTCAAAGACAGAAGGAAATTTACCCTAATGGCAGATCCAAAGCTAGAAGGAAATTACTCAGTGAAGGCTCTGTATCAAGCTCTAGCAGTAGCAGCCATGTGTTTACAAGAGGAAGCGGGTACTAGACCATTGATCAGCGACGTGGTTACAGCAATTGAATTCTTAGCTGCAGACAAGGACATCGATGACGATTCAAATTTGGGACCATATTCAGGTTCAGGAGAAGGTTCTCCGGATAGAAGTAGGAACGATGGAGATAAAATTCTTGGCGCTTGGCCCCTCATTTCCTTCTTTGTAATATTTTCCAATATGACAGCCATTTTAAGGATACTGGACCAATGTGCCAAACGGAATTACAACTTTCATCCTCTTTTTTTGATGTTTTTTTTCCCCCTCCCAGGGTCTAGGGTTGTTTCAAGATTTAGGATTGTTGTCGCGCCTCCTTTGAAATCGAGCACCATTGCCAGTGTGAGAGATCGATCCAATGTAAACTCAAACTCCGTTCCAATGTCATTGTGTGACTCAGTCAAATCAGGCAACCTTATATCAATATTCGTCACTCCCACTCCCCCAGGGTTTAACCTTCGCCCCTCCGCCATGGCCGTGCTCAGACCCACAGCCCTGAGGCAACAAGTTGCAGAGATGATCACTTTGGGGGCCTCCACTTCCCAAGCCTCTTCGTTGATTACTCAATGGCCCTCCTATTTCTTTCTATGGCGGTCCAACTCTGTTTCTAATTCTTCTATTTCCATTTGCGCCTCCTCCAAGAGGCTCTACAGACATTTGTTAGAAGCTTTCTTGATTGAAACTGCGAAGGCTGAATTTTGTCCTCTGAAGAATGTTGGCAGCACTTCTCCAAATGTGAATATGTTTCATGCTTCCTTGCAGTGTCGACAAAGTTCTTTCTTGCACACCAATTCATTTTTTGAAACTAGACAACATGACAAGGAGAGGGCGTTTCTGTCTGATGTAAATGATTGGTCTAAGAGTACTAGGCAGCTGAAACAAGAGAAGCTCTTTAGGTTTTCAGAAACTGAGATCCTGACGAAGAATGACGAAGAAAAGCTAAGAAAAAAAGAAAATCTCATTGACTATGGGACTTTGCATTGTTACAACAGTCTTTCCCCCCCATATTCTAAGGTTCAGTCAAATTTGGGAAGCAACTGTTCCAATGCTTGTAATGATCCTAATTGTATAAACCCTCCAACTAATATGTTATCGGATGAATTCAGCAGACAAGAACCTATAAATTTTGAACGAACTGAAAATGTTACAGCTATAGATAGGATGATTAGTGACAGGGTACCTTTACTTGAGACTGTCAAGTTTTCACGTGGTGAATGCAATGGAGACACTAATTCTTATTCTGGGGAATGGTCCATGAGCAAGCCTGCAAATAATGTTTTGCATAGTCAGGTTGTTCCTATTCAAAGTAACAAAAAGTATTCTGTTTCTCAAAATGGAAAGGGATTAATTATTCGACACGTACCAAACGTTTCACCTAATGGCAGAAATAGAAATATCTCTTTGGGAAAGGTGAATAGTGTACGAAAAACTTCGAAATTTACTGAAGCTGCTAATGGAATAAATAAGGGTGTAGCTGTGGAAGAATTTTCTAAAGTGATCGTCAATGGAAGTGTCACCAAGATGATGGAAGTACTTGCAACTGCTGATAAGCCAGATATAAAGGAGAGGCTTAATGGTGTATATGAAAGCGTTCTTGTTGTTGATGGTGTATCTGCAGCAAAGGAAGTTGTTTCAATGCTTACTACCAAGTACAAGAATCTGGTGCATGCTTGCGATACTGAGGTGGCCAAGATTGATGTGAAGCAAGAAACACCCGTTGACCATGGTGAAATAATATGCTTCAGCATTTATTCAGGACCGAAAGCAGATTTTGGAAATGGAAAGTCTTGCATCTGGGTGGATGTTCTTGATGGTGGCGGTAAGGAAATTTTGCGTCAATTTGCACCATTCTTCGAAGATCCTTTGATTAGAAAGGTCTGGCACAACTACAGCTTTGACAATCACATTATTGAAAACTATGGGATTAAGATTTCTGGCTTCCATGCTGACACGATGCACATGGCACGGTTATGGGATTCATCAAGGAGAATGAATGGTGGATATTCACTTGAAGCTCTTTCTTATGATACAAAGGTCATGTCTGGGGCTAAATTGGGCCAGGAAAAGGAGTTGATTGGTAAAGTGTCCATGAAAACTATCTTTGGCCGGAAGAAGATGAAAAAGGATGGATCTGAAGGCAAACTTATAGTCATTCCCCCTGTTGAAGAACTTCAACGAGAAGAACGGAAACCATGGGTATCTTATTCTGCATTAGATTCAATATGCACGCTGAAGCTTTATGAGAGCTTGAAAAAAACACTGTCTGACATGCCTTGGGAGAGAGATGGAGAAAGGATTCCGGATAAAACAATGTTCAACTTTTATGAAGATTATTGGAAACCATTTGGTGAAGTTCTTGTCAGAATGGAAACTGAGGGAATGCTGGTTGATAGGCCATATCTTGCTGAGATAGAAAAATTGGCCAAAGCAGAACAAGAGATTGCTGCTAACAGATTTCGAAACTGGGCTTCAAAGTACTGCCCTGATGCCAGGTACATGAATGTTGGAAGTGATGCACAACTGCGCCAATTGCTCTTTGGTGGCACTTGTAACAGTAAGAACCCTGAAGAGTCTCTTCCAACTGAAAGGACATTCAAAATTCCAAACAGTGAAAAAGTCACTGAAGAAGGGAAGAAAACTCCCAGCAAGTTTCGGAATATTACTTTACGTCGCTTCAGTGATGAGGCTCTCTCAACAGAATTGTACACAGCAACTGGTTGGCCTTCAGTGAGTAGGGATGCTCTGAAGATCTTAGCAGGCAAGGTCTCTGCAGAATTTGATGACTTCACCGACAACTCGCAGTCTGACACTGAGGTTGTCAACGATTTTGAGACAATGCCTCGTGAAGAAAACAGAAGGCGTATAATTCATGAATGTGCAAATATGTCTGATTATGGAACTACTTTAACAGCATTTAAATTGAAGGAGGAGGGCATGGAAGCCTGTCATGCTATTTCTGCTTTATGCGAAATCTGCTCTATTGACTCTTTGATATCAAATTTCATCCTTCCCTTACAGGGAAGCAATATATCTGGTAAGAATGGGCGTGTCCATTGTTCTCTAAACATCAACACAGAAACTGGCCGCCTCTCCGCTCGGAGACCAAGTTTGCAGAATCAACCGGCTCTGGAAAAGGACCGATATAAGATCCGTCAGGCCTTTATAGCTTCTCCTGGAAATTCCCTCATTGTTGCTGATTATGGCCAGCTGGAACTTAGGATTCTTGCTCATCTTGCCAATTGTAAGAGCATGCTGGACGCCTTTAAAGCTGGGGGAGATTTCCATTCAAGAACTGCAATGAATATGTACCCTCATATTCGTAAAGCTGTTGAAGAAGGAAGCGTGCTTCTTGAGTGGGATCCTCAACCTGGGGAAGATAAACCTCCAGTTCCATTGTTGAAGGATGCCTTTGCTTCTGAAAGAAGGAAAGCTAAAATGCTTAATTTTTCCATTGCATATGGCAAGACTCCTATTGGCCTTTCCAAAGATTGGAAGGTTACCGTGGAGGAAGCAAGTAAGACAGTTGACTTGTGGTATAATGAAAGAACAGAGGTTCGTAGATGGCAAGAACTTCGAAGGGAAGAGGCCGAGAAGAAATCATGTGTTCGCACATTGCTTGGACGAGCTCGTCAGTTTCCTTCAATGAAGCAAGTTACTCGTGCCCAAAAAGGGCATATAGAAAGAGCTGCTATTAATACGCCTGTGCAGGGTAGTGCTGCCGATGTTGCCATGTGTGCCATGTTGGAAATATCTAAAAATTCACGTTTGAGGGAACTTGGATGGAGGCTGCTTTTGCAGGTTCATGATGAAGTGATCTTGGAAGGACCAACTGAGTCAGCTGAGGTTGCTAAGGCCATTGTTGTCGATTGCATGTCGAAACCCTTCAATGGAAAGAATATTCTTAAAGTCGACCTTGCTGTGGATGCCAAGTGTGCACAAAACTGTTCATCACCATTCACCACCCCATCTCTGTATCATTCAAGATTTCATCTCTGTCAAAACCCATTCAACGTCCAAGATCTCTTCTGCAAACAGTTACCCACAGTCTCTACATACCCATTATTGGCCCACTGGATTCCGAGTGGATGGATAGAATCTGCAGCACACTGCGAGAGCAAAACCTCATCCTCCTCTTACAAAACTTGCAAAAACTCAGCCATGGCTTCTGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAGCATCCTTCAATTCTCGCCCCCCACTCAAATTGGGTTCCCAATTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGACGACTTTATCAGAGACGATGTTGAGCAGTACTTTAACTACATGGGAATGCTCGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTAGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTTAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGA 5694 42.89 MNCFQCCMSEEKVKRKSSKKSVKEHQEPKALSSFANISFKSDNSRRRYITEEIKKLGKGNISAQVFSFGELSTATNNFSQDNLLGEGGFGRVYKGILEGTNQVTAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYECMANGSLEDHLLDIPPDKQCLDWKTRMKIAEGAAKGLEYLHETASPPVIYRDFKASNILLDEEFNSKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYSVKALYQALAVAAMCLQEEAGTRPLISDVVTAIEFLAADKDIDDDSNLGPYSGSGEGSPDRSRNDGDKILGAWPLISFFVIFSNMTAILRILDQCAKRNYNFHPLFLMFFFPLPGSRVVSRFRIVVAPPLKSSTIASVRDRSNVNSNSVPMSLCDSVKSGNLISIFVTPTPPGFNLRPSAMAVLRPTALRQQVAEMITLGASTSQASSLITQWPSYFFLWRSNSVSNSSISICASSKRLYRHLLEAFLIETAKAEFCPLKNVGSTSPNVNMFHASLQCRQSSFLHTNSFFETRQHDKERAFLSDVNDWSKSTRQLKQEKLFRFSETEILTKNDEEKLRKKENLIDYGTLHCYNSLSPPYSKVQSNLGSNCSNACNDPNCINPPTNMLSDEFSRQEPINFERTENVTAIDRMISDRVPLLETVKFSRGECNGDTNSYSGEWSMSKPANNVLHSQVVPIQSNKKYSVSQNGKGLIIRHVPNVSPNGRNRNISLGKVNSVRKTSKFTEAANGINKGVAVEEFSKVIVNGSVTKMMEVLATADKPDIKERLNGVYESVLVVDGVSAAKEVVSMLTTKYKNLVHACDTEVAKIDVKQETPVDHGEIICFSIYSGPKADFGNGKSCIWVDVLDGGGKEILRQFAPFFEDPLIRKVWHNYSFDNHIIENYGIKISGFHADTMHMARLWDSSRRMNGGYSLEALSYDTKVMSGAKLGQEKELIGKVSMKTIFGRKKMKKDGSEGKLIVIPPVEELQREERKPWVSYSALDSICTLKLYESLKKTLSDMPWERDGERIPDKTMFNFYEDYWKPFGEVLVRMETEGMLVDRPYLAEIEKLAKAEQEIAANRFRNWASKYCPDARYMNVGSDAQLRQLLFGGTCNSKNPEESLPTERTFKIPNSEKVTEEGKKTPSKFRNITLRRFSDEALSTELYTATGWPSVSRDALKILAGKVSAEFDDFTDNSQSDTEVVNDFETMPREENRRRIIHECANMSDYGTTLTAFKLKEEGMEACHAISALCEICSIDSLISNFILPLQGSNISGKNGRVHCSLNINTETGRLSARRPSLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPIGLSKDWKVTVEEASKTVDLWYNERTEVRRWQELRREEAEKKSCVRTLLGRARQFPSMKQVTRAQKGHIERAAINTPVQGSAADVAMCAMLEISKNSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGKNILKVDLAVDAKCAQNCSSPFTTPSLYHSRFHLCQNPFNVQDLFCKQLPTVSTYPLLAHWIPSGWIESAAHCESKTSSSSYKTCKNSAMASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL 1897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5061478 5083047 - CmaCh16G008560.1 Cma16g00856 311454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00856 1897 Pfam 3'-5' exonuclease 899 1096 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cma16g00856 1897 Gene3D - 877 1132 IPR036397 GO:0003676
Cma16g00856 1897 SUPERFAMILY Ankyrin repeat 1819 1889 IPR036770 -
Cma16g00856 1897 PANTHER DNA POLYMERASE I 827 1656 IPR002298 GO:0003887|GO:0006261
Cma16g00856 1897 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00856 1897 Gene3D - 1367 1656 - -
Cma16g00856 1897 SUPERFAMILY Protein kinase-like (PK-like) 61 355 IPR011009 -
Cma16g00856 1897 Gene3D Phosphorylase Kinase; domain 1 38 153 - -
Cma16g00856 1897 PRINTS DNA-polymerase family A (pol I) signature 1403 1426 IPR002298 GO:0003887|GO:0006261
Cma16g00856 1897 PRINTS DNA-polymerase family A (pol I) signature 1358 1380 IPR002298 GO:0003887|GO:0006261
Cma16g00856 1897 PRINTS DNA-polymerase family A (pol I) signature 1574 1590 IPR002298 GO:0003887|GO:0006261
Cma16g00856 1897 PRINTS DNA-polymerase family A (pol I) signature 1433 1446 IPR002298 GO:0003887|GO:0006261
Cma16g00856 1897 PRINTS DNA-polymerase family A (pol I) signature 1381 1396 IPR002298 GO:0003887|GO:0006261
Cma16g00856 1897 PRINTS DNA-polymerase family A (pol I) signature 1604 1617 IPR002298 GO:0003887|GO:0006261
Cma16g00856 1897 CDD DNA_pol_A_plastid_like 1248 1656 - -
Cma16g00856 1897 CDD STKc_IRAK 84 353 - -
Cma16g00856 1897 Pfam Protein kinase domain 79 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00856 1897 Gene3D - 1412 1581 - -
Cma16g00856 1897 SMART polaultra3 1391 1621 IPR001098 GO:0003677|GO:0003887|GO:0006260
Cma16g00856 1897 CDD DNA_polA_I_Ecoli_like_exo 892 1130 - -
Cma16g00856 1897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Cma16g00856 1897 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Cma16g00856 1897 SUPERFAMILY Ribonuclease H-like 871 1096 IPR012337 -
Cma16g00856 1897 SUPERFAMILY DNA/RNA polymerases 1113 1655 IPR043502 -
Cma16g00856 1897 PANTHER DNA POLYMERASE I A, CHLOROPLASTIC/MITOCHONDRIAL 827 1656 - -
Cma16g00856 1897 Gene3D Transferase(Phosphotransferase) domain 1 155 367 - -
Cma16g00856 1897 Pfam DNA polymerase family A 1325 1656 IPR001098 GO:0003677|GO:0003887|GO:0006260
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00953 Cma16g00856 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00953 Cma-Chr4:4887290 Cma16g00856 Cma-Chr16:5061478 0 dispersed
Cma04g00954 Cma-Chr4:4888921 Cma16g00856 Cma-Chr16:5061478 0 dispersed
Cma16g00856 Cma-Chr16:5061478 Cma08g00010 Cma-Chr8:56342 4.73E-159 dispersed
Cma16g00856 Cma-Chr16:5061478 Cma17g01421 Cma-Chr17:9377727 1.90E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69203 PF00476 DNA_pol_A 4.90E-69 No_clan Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00856 K02335 - csv:101212518 1727.22