Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00856 | ATGAATTGCTTTCAATGTTGTATGTCAGAGGAGAAAGTCAAAAGGAAATCTTCCAAAAAGAGCGTTAAGGAGCATCAGGAGCCAAAAGCTCTATCCTCATTTGCCAACATTTCCTTTAAATCTGATAACAGTCGGCGAAGGTACATAACTGAGGAGATAAAGAAGTTAGGAAAAGGAAACATCTCTGCTCAAGTTTTTTCATTCGGTGAGCTATCTACTGCTACGAATAACTTCAGCCAAGACAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAGGGCATCCTTGAAGGCACAAACCAAGTAACGGCCGTGAAGCAGCTTGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCTAACCTTGTGAATTTGGTTGGGTATTGTGCTGATGGAGATCAGAGGATTTTGGTTTACGAGTGCATGGCTAACGGTTCCTTGGAGGATCATCTTCTTGATATACCGCCAGATAAGCAGTGTCTGGACTGGAAGACGAGGATGAAAATTGCCGAAGGAGCGGCAAAAGGACTTGAATACTTGCATGAAACCGCCAGTCCGCCCGTGATATACCGTGATTTCAAAGCTTCAAACATATTGTTGGATGAGGAATTCAATTCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTGGGTCCTACTGGGGATAAATCTCATGTTTCCACTAGGGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCGCTTACGGGACAATTGACAACAAAATCAGATGTCTACAGCTTCGGTGTCGTGTTTCTGGAGATTATAACTGGAAGACGGGTTATAGACAACGCTAGACCAACAGCAGAACAAAATTTAATTACTTGGGCACAACCACTATTCAAAGACAGAAGGAAATTTACCCTAATGGCAGATCCAAAGCTAGAAGGAAATTACTCAGTGAAGGCTCTGTATCAAGCTCTAGCAGTAGCAGCCATGTGTTTACAAGAGGAAGCGGGTACTAGACCATTGATCAGCGACGTGGTTACAGCAATTGAATTCTTAGCTGCAGACAAGGACATCGATGACGATTCAAATTTGGGACCATATTCAGGTTCAGGAGAAGGTTCTCCGGATAGAAGTAGGAACGATGGAGATAAAATTCTTGGCGCTTGGCCCCTCATTTCCTTCTTTGTAATATTTTCCAATATGACAGCCATTTTAAGGATACTGGACCAATGTGCCAAACGGAATTACAACTTTCATCCTCTTTTTTTGATGTTTTTTTTCCCCCTCCCAGGGTCTAGGGTTGTTTCAAGATTTAGGATTGTTGTCGCGCCTCCTTTGAAATCGAGCACCATTGCCAGTGTGAGAGATCGATCCAATGTAAACTCAAACTCCGTTCCAATGTCATTGTGTGACTCAGTCAAATCAGGCAACCTTATATCAATATTCGTCACTCCCACTCCCCCAGGGTTTAACCTTCGCCCCTCCGCCATGGCCGTGCTCAGACCCACAGCCCTGAGGCAACAAGTTGCAGAGATGATCACTTTGGGGGCCTCCACTTCCCAAGCCTCTTCGTTGATTACTCAATGGCCCTCCTATTTCTTTCTATGGCGGTCCAACTCTGTTTCTAATTCTTCTATTTCCATTTGCGCCTCCTCCAAGAGGCTCTACAGACATTTGTTAGAAGCTTTCTTGATTGAAACTGCGAAGGCTGAATTTTGTCCTCTGAAGAATGTTGGCAGCACTTCTCCAAATGTGAATATGTTTCATGCTTCCTTGCAGTGTCGACAAAGTTCTTTCTTGCACACCAATTCATTTTTTGAAACTAGACAACATGACAAGGAGAGGGCGTTTCTGTCTGATGTAAATGATTGGTCTAAGAGTACTAGGCAGCTGAAACAAGAGAAGCTCTTTAGGTTTTCAGAAACTGAGATCCTGACGAAGAATGACGAAGAAAAGCTAAGAAAAAAAGAAAATCTCATTGACTATGGGACTTTGCATTGTTACAACAGTCTTTCCCCCCCATATTCTAAGGTTCAGTCAAATTTGGGAAGCAACTGTTCCAATGCTTGTAATGATCCTAATTGTATAAACCCTCCAACTAATATGTTATCGGATGAATTCAGCAGACAAGAACCTATAAATTTTGAACGAACTGAAAATGTTACAGCTATAGATAGGATGATTAGTGACAGGGTACCTTTACTTGAGACTGTCAAGTTTTCACGTGGTGAATGCAATGGAGACACTAATTCTTATTCTGGGGAATGGTCCATGAGCAAGCCTGCAAATAATGTTTTGCATAGTCAGGTTGTTCCTATTCAAAGTAACAAAAAGTATTCTGTTTCTCAAAATGGAAAGGGATTAATTATTCGACACGTACCAAACGTTTCACCTAATGGCAGAAATAGAAATATCTCTTTGGGAAAGGTGAATAGTGTACGAAAAACTTCGAAATTTACTGAAGCTGCTAATGGAATAAATAAGGGTGTAGCTGTGGAAGAATTTTCTAAAGTGATCGTCAATGGAAGTGTCACCAAGATGATGGAAGTACTTGCAACTGCTGATAAGCCAGATATAAAGGAGAGGCTTAATGGTGTATATGAAAGCGTTCTTGTTGTTGATGGTGTATCTGCAGCAAAGGAAGTTGTTTCAATGCTTACTACCAAGTACAAGAATCTGGTGCATGCTTGCGATACTGAGGTGGCCAAGATTGATGTGAAGCAAGAAACACCCGTTGACCATGGTGAAATAATATGCTTCAGCATTTATTCAGGACCGAAAGCAGATTTTGGAAATGGAAAGTCTTGCATCTGGGTGGATGTTCTTGATGGTGGCGGTAAGGAAATTTTGCGTCAATTTGCACCATTCTTCGAAGATCCTTTGATTAGAAAGGTCTGGCACAACTACAGCTTTGACAATCACATTATTGAAAACTATGGGATTAAGATTTCTGGCTTCCATGCTGACACGATGCACATGGCACGGTTATGGGATTCATCAAGGAGAATGAATGGTGGATATTCACTTGAAGCTCTTTCTTATGATACAAAGGTCATGTCTGGGGCTAAATTGGGCCAGGAAAAGGAGTTGATTGGTAAAGTGTCCATGAAAACTATCTTTGGCCGGAAGAAGATGAAAAAGGATGGATCTGAAGGCAAACTTATAGTCATTCCCCCTGTTGAAGAACTTCAACGAGAAGAACGGAAACCATGGGTATCTTATTCTGCATTAGATTCAATATGCACGCTGAAGCTTTATGAGAGCTTGAAAAAAACACTGTCTGACATGCCTTGGGAGAGAGATGGAGAAAGGATTCCGGATAAAACAATGTTCAACTTTTATGAAGATTATTGGAAACCATTTGGTGAAGTTCTTGTCAGAATGGAAACTGAGGGAATGCTGGTTGATAGGCCATATCTTGCTGAGATAGAAAAATTGGCCAAAGCAGAACAAGAGATTGCTGCTAACAGATTTCGAAACTGGGCTTCAAAGTACTGCCCTGATGCCAGGTACATGAATGTTGGAAGTGATGCACAACTGCGCCAATTGCTCTTTGGTGGCACTTGTAACAGTAAGAACCCTGAAGAGTCTCTTCCAACTGAAAGGACATTCAAAATTCCAAACAGTGAAAAAGTCACTGAAGAAGGGAAGAAAACTCCCAGCAAGTTTCGGAATATTACTTTACGTCGCTTCAGTGATGAGGCTCTCTCAACAGAATTGTACACAGCAACTGGTTGGCCTTCAGTGAGTAGGGATGCTCTGAAGATCTTAGCAGGCAAGGTCTCTGCAGAATTTGATGACTTCACCGACAACTCGCAGTCTGACACTGAGGTTGTCAACGATTTTGAGACAATGCCTCGTGAAGAAAACAGAAGGCGTATAATTCATGAATGTGCAAATATGTCTGATTATGGAACTACTTTAACAGCATTTAAATTGAAGGAGGAGGGCATGGAAGCCTGTCATGCTATTTCTGCTTTATGCGAAATCTGCTCTATTGACTCTTTGATATCAAATTTCATCCTTCCCTTACAGGGAAGCAATATATCTGGTAAGAATGGGCGTGTCCATTGTTCTCTAAACATCAACACAGAAACTGGCCGCCTCTCCGCTCGGAGACCAAGTTTGCAGAATCAACCGGCTCTGGAAAAGGACCGATATAAGATCCGTCAGGCCTTTATAGCTTCTCCTGGAAATTCCCTCATTGTTGCTGATTATGGCCAGCTGGAACTTAGGATTCTTGCTCATCTTGCCAATTGTAAGAGCATGCTGGACGCCTTTAAAGCTGGGGGAGATTTCCATTCAAGAACTGCAATGAATATGTACCCTCATATTCGTAAAGCTGTTGAAGAAGGAAGCGTGCTTCTTGAGTGGGATCCTCAACCTGGGGAAGATAAACCTCCAGTTCCATTGTTGAAGGATGCCTTTGCTTCTGAAAGAAGGAAAGCTAAAATGCTTAATTTTTCCATTGCATATGGCAAGACTCCTATTGGCCTTTCCAAAGATTGGAAGGTTACCGTGGAGGAAGCAAGTAAGACAGTTGACTTGTGGTATAATGAAAGAACAGAGGTTCGTAGATGGCAAGAACTTCGAAGGGAAGAGGCCGAGAAGAAATCATGTGTTCGCACATTGCTTGGACGAGCTCGTCAGTTTCCTTCAATGAAGCAAGTTACTCGTGCCCAAAAAGGGCATATAGAAAGAGCTGCTATTAATACGCCTGTGCAGGGTAGTGCTGCCGATGTTGCCATGTGTGCCATGTTGGAAATATCTAAAAATTCACGTTTGAGGGAACTTGGATGGAGGCTGCTTTTGCAGGTTCATGATGAAGTGATCTTGGAAGGACCAACTGAGTCAGCTGAGGTTGCTAAGGCCATTGTTGTCGATTGCATGTCGAAACCCTTCAATGGAAAGAATATTCTTAAAGTCGACCTTGCTGTGGATGCCAAGTGTGCACAAAACTGTTCATCACCATTCACCACCCCATCTCTGTATCATTCAAGATTTCATCTCTGTCAAAACCCATTCAACGTCCAAGATCTCTTCTGCAAACAGTTACCCACAGTCTCTACATACCCATTATTGGCCCACTGGATTCCGAGTGGATGGATAGAATCTGCAGCACACTGCGAGAGCAAAACCTCATCCTCCTCTTACAAAACTTGCAAAAACTCAGCCATGGCTTCTGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAGCATCCTTCAATTCTCGCCCCCCACTCAAATTGGGTTCCCAATTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGACGACTTTATCAGAGACGATGTTGAGCAGTACTTTAACTACATGGGAATGCTCGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTAGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTTAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGA | 5694 | 42.89 | MNCFQCCMSEEKVKRKSSKKSVKEHQEPKALSSFANISFKSDNSRRRYITEEIKKLGKGNISAQVFSFGELSTATNNFSQDNLLGEGGFGRVYKGILEGTNQVTAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYECMANGSLEDHLLDIPPDKQCLDWKTRMKIAEGAAKGLEYLHETASPPVIYRDFKASNILLDEEFNSKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYSVKALYQALAVAAMCLQEEAGTRPLISDVVTAIEFLAADKDIDDDSNLGPYSGSGEGSPDRSRNDGDKILGAWPLISFFVIFSNMTAILRILDQCAKRNYNFHPLFLMFFFPLPGSRVVSRFRIVVAPPLKSSTIASVRDRSNVNSNSVPMSLCDSVKSGNLISIFVTPTPPGFNLRPSAMAVLRPTALRQQVAEMITLGASTSQASSLITQWPSYFFLWRSNSVSNSSISICASSKRLYRHLLEAFLIETAKAEFCPLKNVGSTSPNVNMFHASLQCRQSSFLHTNSFFETRQHDKERAFLSDVNDWSKSTRQLKQEKLFRFSETEILTKNDEEKLRKKENLIDYGTLHCYNSLSPPYSKVQSNLGSNCSNACNDPNCINPPTNMLSDEFSRQEPINFERTENVTAIDRMISDRVPLLETVKFSRGECNGDTNSYSGEWSMSKPANNVLHSQVVPIQSNKKYSVSQNGKGLIIRHVPNVSPNGRNRNISLGKVNSVRKTSKFTEAANGINKGVAVEEFSKVIVNGSVTKMMEVLATADKPDIKERLNGVYESVLVVDGVSAAKEVVSMLTTKYKNLVHACDTEVAKIDVKQETPVDHGEIICFSIYSGPKADFGNGKSCIWVDVLDGGGKEILRQFAPFFEDPLIRKVWHNYSFDNHIIENYGIKISGFHADTMHMARLWDSSRRMNGGYSLEALSYDTKVMSGAKLGQEKELIGKVSMKTIFGRKKMKKDGSEGKLIVIPPVEELQREERKPWVSYSALDSICTLKLYESLKKTLSDMPWERDGERIPDKTMFNFYEDYWKPFGEVLVRMETEGMLVDRPYLAEIEKLAKAEQEIAANRFRNWASKYCPDARYMNVGSDAQLRQLLFGGTCNSKNPEESLPTERTFKIPNSEKVTEEGKKTPSKFRNITLRRFSDEALSTELYTATGWPSVSRDALKILAGKVSAEFDDFTDNSQSDTEVVNDFETMPREENRRRIIHECANMSDYGTTLTAFKLKEEGMEACHAISALCEICSIDSLISNFILPLQGSNISGKNGRVHCSLNINTETGRLSARRPSLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPIGLSKDWKVTVEEASKTVDLWYNERTEVRRWQELRREEAEKKSCVRTLLGRARQFPSMKQVTRAQKGHIERAAINTPVQGSAADVAMCAMLEISKNSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGKNILKVDLAVDAKCAQNCSSPFTTPSLYHSRFHLCQNPFNVQDLFCKQLPTVSTYPLLAHWIPSGWIESAAHCESKTSSSSYKTCKNSAMASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL | 1897 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 5061478 | 5083047 | - | CmaCh16G008560.1 | Cma16g00856 | 311454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00856 | 1897 | Pfam | 3'-5' exonuclease | 899 | 1096 | IPR002562 | GO:0003676|GO:0006139|GO:0008408 | |
Cma16g00856 | 1897 | Gene3D | - | 877 | 1132 | IPR036397 | GO:0003676 | |
Cma16g00856 | 1897 | SUPERFAMILY | Ankyrin repeat | 1819 | 1889 | IPR036770 | - | |
Cma16g00856 | 1897 | PANTHER | DNA POLYMERASE I | 827 | 1656 | IPR002298 | GO:0003887|GO:0006261 | |
Cma16g00856 | 1897 | ProSiteProfiles | Protein kinase domain profile. | 78 | 355 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma16g00856 | 1897 | Gene3D | - | 1367 | 1656 | - | - | |
Cma16g00856 | 1897 | SUPERFAMILY | Protein kinase-like (PK-like) | 61 | 355 | IPR011009 | - | |
Cma16g00856 | 1897 | Gene3D | Phosphorylase Kinase; domain 1 | 38 | 153 | - | - | |
Cma16g00856 | 1897 | PRINTS | DNA-polymerase family A (pol I) signature | 1403 | 1426 | IPR002298 | GO:0003887|GO:0006261 | |
Cma16g00856 | 1897 | PRINTS | DNA-polymerase family A (pol I) signature | 1358 | 1380 | IPR002298 | GO:0003887|GO:0006261 | |
Cma16g00856 | 1897 | PRINTS | DNA-polymerase family A (pol I) signature | 1574 | 1590 | IPR002298 | GO:0003887|GO:0006261 | |
Cma16g00856 | 1897 | PRINTS | DNA-polymerase family A (pol I) signature | 1433 | 1446 | IPR002298 | GO:0003887|GO:0006261 | |
Cma16g00856 | 1897 | PRINTS | DNA-polymerase family A (pol I) signature | 1381 | 1396 | IPR002298 | GO:0003887|GO:0006261 | |
Cma16g00856 | 1897 | PRINTS | DNA-polymerase family A (pol I) signature | 1604 | 1617 | IPR002298 | GO:0003887|GO:0006261 | |
Cma16g00856 | 1897 | CDD | DNA_pol_A_plastid_like | 1248 | 1656 | - | - | |
Cma16g00856 | 1897 | CDD | STKc_IRAK | 84 | 353 | - | - | |
Cma16g00856 | 1897 | Pfam | Protein kinase domain | 79 | 348 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma16g00856 | 1897 | Gene3D | - | 1412 | 1581 | - | - | |
Cma16g00856 | 1897 | SMART | polaultra3 | 1391 | 1621 | IPR001098 | GO:0003677|GO:0003887|GO:0006260 | |
Cma16g00856 | 1897 | CDD | DNA_polA_I_Ecoli_like_exo | 892 | 1130 | - | - | |
Cma16g00856 | 1897 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 201 | 213 | IPR008271 | GO:0004672|GO:0006468 | |
Cma16g00856 | 1897 | ProSitePatterns | Protein kinases ATP-binding region signature. | 84 | 107 | IPR017441 | GO:0005524 | |
Cma16g00856 | 1897 | SUPERFAMILY | Ribonuclease H-like | 871 | 1096 | IPR012337 | - | |
Cma16g00856 | 1897 | SUPERFAMILY | DNA/RNA polymerases | 1113 | 1655 | IPR043502 | - | |
Cma16g00856 | 1897 | PANTHER | DNA POLYMERASE I A, CHLOROPLASTIC/MITOCHONDRIAL | 827 | 1656 | - | - | |
Cma16g00856 | 1897 | Gene3D | Transferase(Phosphotransferase) domain 1 | 155 | 367 | - | - | |
Cma16g00856 | 1897 | Pfam | DNA polymerase family A | 1325 | 1656 | IPR001098 | GO:0003677|GO:0003887|GO:0006260 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g00953 | Cma16g00856 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00953 | Cma-Chr4:4887290 | Cma16g00856 | Cma-Chr16:5061478 | 0 | dispersed | |
Cma04g00954 | Cma-Chr4:4888921 | Cma16g00856 | Cma-Chr16:5061478 | 0 | dispersed | |
Cma16g00856 | Cma-Chr16:5061478 | Cma08g00010 | Cma-Chr8:56342 | 4.73E-159 | dispersed | |
Cma16g00856 | Cma-Chr16:5061478 | Cma17g01421 | Cma-Chr17:9377727 | 1.90E-160 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69203 | PF00476 | DNA_pol_A | 4.90E-69 | No_clan | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00856 | K02335 | - | csv:101212518 | 1727.22 |