Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00864 ATGACCCACTTTCTCGAACCAAGATTCCACCAAACCCCATTTCCCACCCTTCTCCGCCGTATTCCCAAATCTCCACCGCCCATTTCAATCCGATGCCGCGGCGGCGGCGCCCGCGACCTCCAATCTCGATTACACTCCATCAACAACACCCAGAAGCTCACCGAAGCCATGAAGCTCGTCGCCGCCGCCAAAGTCCGCCGAGCCCAAGAAGCCGTAATCAACAGTCGCCCCTTCGCCCAATCCCTCGCCCAATTTCTCCATTTCATCACCCAACAAATCCAACCACACGAAATCGATTTCCCCTTTCTAATCCCTGCACCCGTCGGAAAAGTCGCCCTCGTCGTCTTCACCGGTGACCGGGGACTCTGTGGCGGTTTCAACGCTTCCGTGATAAAAAAAGCCGACACCCGATTGGCCGAATTGAAAAATCTCGATCTGGGTCACATCCTAATCAGCGTTGGAAAAAAGGGTAACTCGCATTTCCGCCGCCGGTCCGACGTTCAAGTCGATAAATACATAACCAGCTGCGGCGGCGGTTCAGTACCGACAGCAAAAGAAGCACAAACCATTGCAGACATTGTGTTTTCTCTGTTCATCAGCGAAGAAGTGGACAAAGTGGAACTAATTTACACAAAGTTCGTTTCGTTGCTGAATTGTGAGCCTGTGATTGAGACATTGCTGCCATTGTTGGGCGATAGGGAAGCCATGGGAGATGGAGGGTTTAGATTGACAACAAAGGAGGGGAAATTGAAGGTGGAGAGAGAGGGGAAAAGGGGGAATTTAGAGGAAATTCCGGCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATAGCTCTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCCATGGCGAGTGAGGTGGCAGCGAGGATGAACGCCATGAGTAATGCTTCTGAGAATGCTCTGGAGTTGAAGAACTCTGTTTTGGTTGCTTATAATCGAGAGAGACAGGCTAAGATTACTGGGGAAATTCTGGAAATTGTTGCTGGAGCTGAGGCTCTTCAAGGATTTTGA 1059 50.14 MTHFLEPRFHQTPFPTLLRRIPKSPPPISIRCRGGGARDLQSRLHSINNTQKLTEAMKLVAAAKVRRAQEAVINSRPFAQSLAQFLHFITQQIQPHEIDFPFLIPAPVGKVALVVFTGDRGLCGGFNASVIKKADTRLAELKNLDLGHILISVGKKGNSHFRRRSDVQVDKYITSCGGGSVPTAKEAQTIADIVFSLFISEEVDKVELIYTKFVSLLNCEPVIETLLPLLGDREAMGDGGFRLTTKEGKLKVEREGKRGNLEEIPALLEFEQDPVQILDGMIALYLNSQILRALQESMASEVAARMNAMSNASENALELKNSVLVAYNRERQAKITGEILEIVAGAEALQGF 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5162871 5163929 + CmaCh16G008640.1 Cma16g00864 311462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00864 352 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 37 349 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma16g00864 352 Hamap ATP synthase gamma chain [atpG]. 34 349 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma16g00864 352 Pfam ATP synthase 38 349 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma16g00864 352 PRINTS ATP synthase gamma subunit signature 108 127 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma16g00864 352 PRINTS ATP synthase gamma subunit signature 204 221 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma16g00864 352 PRINTS ATP synthase gamma subunit signature 296 315 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma16g00864 352 PRINTS ATP synthase gamma subunit signature 327 348 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma16g00864 352 Gene3D ATP synthase, gamma subunit, helix hairpin domain 249 349 - -
Cma16g00864 352 Gene3D ATP synthase, gamma subunit, helix hairpin domain 35 99 - -
Cma16g00864 352 PANTHER ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE 14 350 - -
Cma16g00864 352 CDD F1-ATPase_gamma 38 346 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma16g00864 352 PANTHER ATP SYNTHASE GAMMA CHAIN 14 350 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma16g00864 352 ProSitePatterns ATP synthase gamma subunit signature. 335 348 IPR023632 -
Cma16g00864 352 Gene3D - 106 236 - -
Cma16g00864 352 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 37 349 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00537 Cma-Chr3:5065340 Cma16g00864 Cma-Chr16:5162871 8.74E-139 dispersed
Cma16g00864 Cma-Chr16:5162871 Cma18g00259 Cma-Chr18:1357052 1.28E-71 dispersed
Cma13g01077 Cma-Chr13:8124681 Cma16g00864 Cma-Chr16:5162871 3.04E-28 transposed
Cma13g00740 Cma-Chr13:6538101 Cma16g00864 Cma-Chr16:5162871 4.20E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00864 K02115 - csv:101214682 553.132