Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00864 | ATGACCCACTTTCTCGAACCAAGATTCCACCAAACCCCATTTCCCACCCTTCTCCGCCGTATTCCCAAATCTCCACCGCCCATTTCAATCCGATGCCGCGGCGGCGGCGCCCGCGACCTCCAATCTCGATTACACTCCATCAACAACACCCAGAAGCTCACCGAAGCCATGAAGCTCGTCGCCGCCGCCAAAGTCCGCCGAGCCCAAGAAGCCGTAATCAACAGTCGCCCCTTCGCCCAATCCCTCGCCCAATTTCTCCATTTCATCACCCAACAAATCCAACCACACGAAATCGATTTCCCCTTTCTAATCCCTGCACCCGTCGGAAAAGTCGCCCTCGTCGTCTTCACCGGTGACCGGGGACTCTGTGGCGGTTTCAACGCTTCCGTGATAAAAAAAGCCGACACCCGATTGGCCGAATTGAAAAATCTCGATCTGGGTCACATCCTAATCAGCGTTGGAAAAAAGGGTAACTCGCATTTCCGCCGCCGGTCCGACGTTCAAGTCGATAAATACATAACCAGCTGCGGCGGCGGTTCAGTACCGACAGCAAAAGAAGCACAAACCATTGCAGACATTGTGTTTTCTCTGTTCATCAGCGAAGAAGTGGACAAAGTGGAACTAATTTACACAAAGTTCGTTTCGTTGCTGAATTGTGAGCCTGTGATTGAGACATTGCTGCCATTGTTGGGCGATAGGGAAGCCATGGGAGATGGAGGGTTTAGATTGACAACAAAGGAGGGGAAATTGAAGGTGGAGAGAGAGGGGAAAAGGGGGAATTTAGAGGAAATTCCGGCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATAGCTCTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCCATGGCGAGTGAGGTGGCAGCGAGGATGAACGCCATGAGTAATGCTTCTGAGAATGCTCTGGAGTTGAAGAACTCTGTTTTGGTTGCTTATAATCGAGAGAGACAGGCTAAGATTACTGGGGAAATTCTGGAAATTGTTGCTGGAGCTGAGGCTCTTCAAGGATTTTGA | 1059 | 50.14 | MTHFLEPRFHQTPFPTLLRRIPKSPPPISIRCRGGGARDLQSRLHSINNTQKLTEAMKLVAAAKVRRAQEAVINSRPFAQSLAQFLHFITQQIQPHEIDFPFLIPAPVGKVALVVFTGDRGLCGGFNASVIKKADTRLAELKNLDLGHILISVGKKGNSHFRRRSDVQVDKYITSCGGGSVPTAKEAQTIADIVFSLFISEEVDKVELIYTKFVSLLNCEPVIETLLPLLGDREAMGDGGFRLTTKEGKLKVEREGKRGNLEEIPALLEFEQDPVQILDGMIALYLNSQILRALQESMASEVAARMNAMSNASENALELKNSVLVAYNRERQAKITGEILEIVAGAEALQGF | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 5162871 | 5163929 | + | CmaCh16G008640.1 | Cma16g00864 | 311462 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00864 | 352 | TIGRFAM | ATPsyn_F1gamma: ATP synthase F1, gamma subunit | 37 | 349 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma16g00864 | 352 | Hamap | ATP synthase gamma chain [atpG]. | 34 | 349 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma16g00864 | 352 | Pfam | ATP synthase | 38 | 349 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma16g00864 | 352 | PRINTS | ATP synthase gamma subunit signature | 108 | 127 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma16g00864 | 352 | PRINTS | ATP synthase gamma subunit signature | 204 | 221 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma16g00864 | 352 | PRINTS | ATP synthase gamma subunit signature | 296 | 315 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma16g00864 | 352 | PRINTS | ATP synthase gamma subunit signature | 327 | 348 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma16g00864 | 352 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 249 | 349 | - | - | |
Cma16g00864 | 352 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 35 | 99 | - | - | |
Cma16g00864 | 352 | PANTHER | ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE | 14 | 350 | - | - | |
Cma16g00864 | 352 | CDD | F1-ATPase_gamma | 38 | 346 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma16g00864 | 352 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 14 | 350 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma16g00864 | 352 | ProSitePatterns | ATP synthase gamma subunit signature. | 335 | 348 | IPR023632 | - | |
Cma16g00864 | 352 | Gene3D | - | 106 | 236 | - | - | |
Cma16g00864 | 352 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 37 | 349 | IPR035968 | GO:0015986|GO:0045261|GO:0046933 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00537 | Cma-Chr3:5065340 | Cma16g00864 | Cma-Chr16:5162871 | 8.74E-139 | dispersed | |
Cma16g00864 | Cma-Chr16:5162871 | Cma18g00259 | Cma-Chr18:1357052 | 1.28E-71 | dispersed | |
Cma13g01077 | Cma-Chr13:8124681 | Cma16g00864 | Cma-Chr16:5162871 | 3.04E-28 | transposed | |
Cma13g00740 | Cma-Chr13:6538101 | Cma16g00864 | Cma-Chr16:5162871 | 4.20E-139 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00864 | K02115 | - | csv:101214682 | 553.132 |