Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00866 ATGGCTTACTGCACGGCTCACACCTTCCAAATTCCGGCCTCCAACGTCATTTCACGGCCACGCACTGTCACTCCCTCTGTCGGCGCCGCCGTGTCCTTGTGGCGCCGCCCTTCATCTATTCCATCTATTTCAAACCGCAACATGTCCTTCAAATGCCACGCCATTTCCAAGTGTGATGCGTTTTCTATGACAGATATCACAACTATTGAAACTAATGAGGCTCCAGAAGCATTAGGGCCATATTCTCAAGGCATCATAGCCAACAACTTTATATTTGTGTCTGGCTCCCTAGGTCTGATTCCCGAGACAGGAGAATTAATTTCCGATCATGTTGGAGAGCAAGCCGAGCAGGCCCTCAAAAATATTGGTGCAATATTGAAAGCTGGAGGTGCGGACTATAATAGAGTGGTTAAGACAACTATTATGCTGGCTGATGTAGCTGACTTTGCATTAGTGAATCAAATTTATGCTCGATACTTTTCCGAGTACCCTGCTCCAGCTCGGTCAACATTTCAGGCTGGAGCATTGCCCAAAAATGCCAAGATCGAAATCGATGCAATAGCTGTGGTTTAA 573 46.6 MAYCTAHTFQIPASNVISRPRTVTPSVGAAVSLWRRPSSIPSISNRNMSFKCHAISKCDAFSMTDITTIETNEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGEQAEQALKNIGAILKAGGADYNRVVKTTIMLADVADFALVNQIYARYFSEYPAPARSTFQAGALPKNAKIEIDAIAVV 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5212617 5214360 - CmaCh16G008660.1 Cma16g00866 311464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00866 190 TIGRFAM TIGR00004: reactive intermediate/imine deaminase 67 189 IPR006056 -
Cma16g00866 190 CDD YjgF_YER057c_UK114_family 81 188 - -
Cma16g00866 190 Pfam Endoribonuclease L-PSP 72 190 IPR006175 -
Cma16g00866 190 Gene3D - 65 190 IPR035959 -
Cma16g00866 190 SUPERFAMILY YjgF-like 66 190 IPR035959 -
Cma16g00866 190 PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA 70 189 IPR006175 -
Cma16g00866 190 ProSitePatterns Uncharacterized protein family UPF0076 signature. 166 184 IPR019897 -
Cma16g00866 190 PANTHER BNAA05G36080D PROTEIN 70 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00866 K09022 ridA, tdcF, RIDA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - csv:101217156 273.863
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00958 Cma16g00866 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00963 Cma-Chr12:7567776 Cma16g00866 Cma-Chr16:5212617 3.49E-06 transposed
Cma16g00866 Cma-Chr16:5212617 Cma04g00958 Cma-Chr4:4914594 3.50E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g511 . . . . Bpe09g00176 . Bma10g00548 . Cmo16g00896 Cmo04g01031 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1144 Cone15ag1162 . Csa03g00508 . . Blo07g00905 Blo10g00832 Bda05g00722 Bda12g00909 . . . . . . . Cma04g00958 Cma16g00866 Car04g00897 Car16g00843 . Cpe01g00870 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013064 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 0 2 1 1 1 0 2 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00866 Cma_Chr16 FPKM 10.617706 10.82824 225.796112 229.941803 3.881819 3.158881 3.467488 44.992676 44.515541 45.413082