Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00898 ATGGGCGGGGGAGCCAATTTTGGTGAGAAGGGCGGCGACGACTTGATTGGCGAAGAGGCTAGTGTGACACCCAGATTCCAAAGGTTCATCTCCACTTCCCAACCCTTTCATTGCAAGCTTTCAACTATGAAAATGGCTAACAACTTGGGACTATCCTCAATCCTCTTCTCGCTCCTCTTCTTCTCTTTGATCATCGAAACCAGTTTGGGAGCTCGTAACTTGAATGAAAATGTGTTAGATTGGGTGAAGATGGACCATCGTCGTTTTCTTCGTGCTGTTATTCATGTCTCCAATCTCGACCATTCTATCAAAGTTTACACGCGAGGCTTTGGAATGAAGCTTTTGAAGAGAAGGAACTTTCCCGATCGTGGCTATAAAGATGCCCTTGTTGGATTTGGACCTCAAAACACCCACTTTTTGTTGGAACTCAGACAAAGGGATGGATTGAGCAATGTATTTATAGGTACAGAGTTTGGGCACTTTGGAATTGCTACTCAAAATGTCTACAAATCTGTGGAGCAAGCTCGAGCAAATGGTGCAGTGGTAATTCATGAACCCGAAAAAGTTAACCAAACTATATTCGCATTCGTGCAAGATCACGATGGATATAAGTTCAAGTTCATCCAAACCCCCTCACCCCTTGACCCTCTCTCCCCAATAATGCTTCGTGTACAAAATTTGGATCTCTCCGCCAACTTCTATTCAAAGGCATTGGGAATGAAACTCTTTAAGAGGCAAAACAATTCAAAAGGAGAGTTTATATTGGCTACATTGGGCTATGGAACAAACCAAAGTAAAACCACAATGCTCGAATTGGAAAAAAGAAATAATATCTCTCGTAATGATGGACGAGATGGCTATTCAATGCTTTATATTAGTACCGACAACGTAAACAAGACGGCTGAGGCTGCTAAAGTGGTAATCAAAGAGCTGGGTGGGAACCTAATCATGGAGCCAGTTTTGGTGCCTACCATTAACGTCAAAATGACTGGATTTAGCGACCCAGATGGGTGGAGAATGATCATGGTGGACAACAAAGATTACCGAAGAGGAACGCTATAG 1062 43.03 MGGGANFGEKGGDDLIGEEASVTPRFQRFISTSQPFHCKLSTMKMANNLGLSSILFSLLFFSLIIETSLGARNLNENVLDWVKMDHRRFLRAVIHVSNLDHSIKVYTRGFGMKLLKRRNFPDRGYKDALVGFGPQNTHFLLELRQRDGLSNVFIGTEFGHFGIATQNVYKSVEQARANGAVVIHEPEKVNQTIFAFVQDHDGYKFKFIQTPSPLDPLSPIMLRVQNLDLSANFYSKALGMKLFKRQNNSKGEFILATLGYGTNQSKTTMLELEKRNNISRNDGRDGYSMLYISTDNVNKTAEAAKVVIKELGGNLIMEPVLVPTINVKMTGFSDPDGWRMIMVDNKDYRRGTL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6565342 6570064 + CmaCh16G008980.1 Cma16g00898 311496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00898 353 Gene3D - 214 351 IPR029068 -
Cma16g00898 353 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 218 344 IPR029068 -
Cma16g00898 353 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 86 215 IPR029068 -
Cma16g00898 353 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 219 339 IPR004360 -
Cma16g00898 353 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 92 207 IPR004360 -
Cma16g00898 353 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 216 345 IPR037523 -
Cma16g00898 353 PANTHER LACTOYLGLUTATHIONE LYASE 49 350 - -
Cma16g00898 353 Gene3D - 64 210 IPR029068 -
Cma16g00898 353 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 88 210 IPR037523 -
Cma16g00898 353 PANTHER LACTOYLGLUTATHIONE LYASE 49 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00898 K01759 GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5] - csv:101202797 462.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00898 Cma-Chr16:6565342 Cma18g00265 Cma-Chr18:1379357 5.05E-71 dispersed
Cma16g00898 Cma-Chr16:6565342 Cma11g00628 Cma-Chr11:3035055 2.59E-77 transposed
Cma16g00898 Cma-Chr16:6565342 Cma03g00542 Cma-Chr3:5076873 3.49E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008029 0 2 0 0 0 2 1 2 2 1 2 2 1 1 2 1 2 0 1 2 2 1 2 0 2 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00898 Cma_Chr16 FPKM 7.531155 6.637963 5.940325 4.528666 0.620557 0.854629 0.715481 0.940744 0.627216 0.0