Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00904 ATGGACGAAGTGATCGTAGCAGCCGACGCTTCGTACAGGCCTTCACTTCTCCCCTCAAATCTTCCTCTCCTCTCTGCCTTCCTTTCCTTCGCGCTCGCTCAGTTTCTCAAGCTCTTCACTACCTGGTTCAAAGAGAAGAGATGGGATTCCAAAAGGATGCTGGGGTCTGGTGGAATGCCTTCATCACATTCGGCCACGGTAATGTCTCTAGCTGTAGCTATTGGCTTGCAAGAAGGAACTGGGGGACCAGCTTTTGCACTTGCTTTGGTTTTGGCATGCATTGTAATGTATGATGCTACTGGTGTTAGACTCCATGCCGGTCGCCAAGCTGAACTATTAAATCAGATTGTCTGTGAACTTCCTCCCGAGCATCCTGTCTCAAGCGTTAGACCTCTACGGGATTCGCTTGGCCATACCCCGCTCCAGGTGCTTGCTGGGGCAGTGTTGGGATGTTTAGTTGCGTACCTGATGAGGGTTTGA 480 50.83 MDEVIVAADASYRPSLLPSNLPLLSAFLSFALAQFLKLFTTWFKEKRWDSKRMLGSGGMPSSHSATVMSLAVAIGLQEGTGGPAFALALVLACIVMYDATGVRLHAGRQAELLNQIVCELPPEHPVSSVRPLRDSLGHTPLQVLAGAVLGCLVAYLMRV 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6632618 6641442 + CmaCh16G009040.1 Cma16g00904 311502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00904 159 PANTHER BNAA05G19610D PROTEIN 10 158 - -
Cma16g00904 159 Pfam Divergent PAP2 family 20 153 IPR003832 -
Cma16g00904 159 PANTHER ACID PHOSPHATASE/VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 10 158 IPR003832 -
Cma16g00904 159 CDD PAP2_like 55 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00904 K09775 K09775; uncharacterized protein - zju:107432790 258.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01818 Cma-Chr4:9157898 Cma16g00904 Cma-Chr16:6632618 4.37E-65 dispersed
Cma16g00904 Cma-Chr16:6632618 Cma18g00718 Cma-Chr18:6494989 1.79E-60 dispersed
Cma16g00904 Cma-Chr16:6632618 Cma20g00597 Cma-Chr20:2808293 5.45E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g555 Blo03g00547 Blo03g01456 Bda07g00374 Bda09g00405 . Bpe08g01116 . . Cmo16g00939 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0050 Cone9ag0060 . . . . . . . . . . Bpe11g00559 . Bma07g01287 Bma14g00327 . . . . Cma16g00904 . Car16g00879 Cpe14g00721 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000740 5 3 3 4 4 2 3 2 3 2 2 2 2 2 2 3 2 7 5 3 2 3 3 2 2 2 2 9 4 3 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00904 Cma_Chr16 FPKM 21.102821 21.287951 40.41592 40.107948 19.467163 20.092903 19.268654 64.170616 64.22216 65.167183