Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00905 ATGGCCTCCACTACCACAGAATCTTCTCGTATCCTTCACGAAATCGAGACCTTGAAATCCGCTAGGTCCGACTTAGACCGTCGTATTTCATCCCTCGAGTCCCAGCTCCGGGACCTGAATCATCACCAGAACAATGGCGTCTCTCATGCCCCTTCCGCTTCAGTATCCACTCTCGACTCCACTTTTCCTCATGGATTGTCCCCCGACATGATTTACAGATACAGTCGCCACCTCCTCCTTCCTTCCTTCGGAGTCCAAGCGCAATCGCGGCTTTTGAAGTCTTCGATTTTAGTAGTTGGAGCAGGAGGGTTGGGCTCACCAGCTTTGATGTATCTTGCAGCTTGTGGGGCTGGTCGTCTGGGAATTGTTGATCATGATGTAGTTGAGCTAAATAACATGCATCGGCAGATCATCCATACTGAGGCATATATTGGACGGTCGAAAGTAGAATCTGCTGCTGCGACGTGTCACTCGATCAACTCTACTGTCCAGATTGTTGAACACAAAGAAGCTCTTCGTACATCAAACGCTTTAGAAATTTTTAGCAAATATGATATCATAGTAGATGCAACAGATAATGCCCCTAGCCGATACATGATTAGTGATTGTTGTGTGGTGCTGGGAAAGCCTCTTGTGTCTGGTGCAGCTGTAGGTTTGGAGGGGCAGCTGACAGTTTACAATTACAATGGAGGTCCATGCTACCGATGCCTATTTCCAACTCCCCCGCCAACAACAGCGTGCCAAAGGTGTTCTGATAGTGGTGTTCTTGGAGTAGTTCCTGGGATCATTGGCTGTCTTCAAGCCTTGGAGGCTATAAAAATTGCAAGTGCAGTTGGTGAGCCACTTTCTGGACGGATGCTTCTGTTTGATGCCTTAGCAGCAAGGATCCGAACTGTCAAGATTCGTGGAAGGTCGTTGCAGTGTGAAGTATGTGGAGAAAATTCTAAATTCAAAGCAGCACAATTTCAAGAATTCGACTATGAGAAGTTCACCCAGTCTCCATTATCTACGTCTCCTCTGAGGTTAAAACTACTGGAGCCACACTCAAGAATAAGTGCCAAAGAGTACAGTGATCGACTACGTAATGGCGAATCACACGTGCTTTTGGATGTCCGTCCCGAGCACCATTTCAAGATTGTTTCTCTTCCGAACTCCCTTAACGTTCCGCTGGCTAGTTTGGACGGAAGGCTGGAAGAAGTTGGTTTGGCTTTGAAGGAAGAGGAACATAAACAGGGTTCAGACTCCTCCAGTGGTGATGTTCAATTATACGTTGTTTGTAGGAGAGGGAATGATTCTCAAAGAGCCGTCAAGGCTCTCCAGGAGAAAGGTTTCACTTCAGCTAAGGATATCATTGGTGGATTGGAGGGTTGGGCCCGCGAGGTAGACCCCACTTACCCTGCCTATTAA 1407 47.33 MASTTTESSRILHEIETLKSARSDLDRRISSLESQLRDLNHHQNNGVSHAPSASVSTLDSTFPHGLSPDMIYRYSRHLLLPSFGVQAQSRLLKSSILVVGAGGLGSPALMYLAACGAGRLGIVDHDVVELNNMHRQIIHTEAYIGRSKVESAAATCHSINSTVQIVEHKEALRTSNALEIFSKYDIIVDATDNAPSRYMISDCCVVLGKPLVSGAAVGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCSDSGVLGVVPGIIGCLQALEAIKIASAVGEPLSGRMLLFDALAARIRTVKIRGRSLQCEVCGENSKFKAAQFQEFDYEKFTQSPLSTSPLRLKLLEPHSRISAKEYSDRLRNGESHVLLDVRPEHHFKIVSLPNSLNVPLASLDGRLEEVGLALKEEEHKQGSDSSSGDVQLYVVCRRGNDSQRAVKALQEKGFTSAKDIIGGLEGWAREVDPTYPAY 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6646511 6650106 - CmaCh16G009050.1 Cma16g00905 311503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00905 468 Pfam Rhodanese-like domain 352 459 IPR001763 -
Cma16g00905 468 Gene3D - 349 468 IPR036873 -
Cma16g00905 468 Coils Coil 15 42 - -
Cma16g00905 468 SMART rhod_4 352 463 IPR001763 -
Cma16g00905 468 Pfam ThiF family 74 309 IPR000594 -
Cma16g00905 468 ProSiteProfiles Rhodanese domain profile. 362 466 IPR001763 -
Cma16g00905 468 Gene3D - 68 317 - -
Cma16g00905 468 PANTHER ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3 5 454 - -
Cma16g00905 468 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 65 435 IPR035985 GO:0008641
Cma16g00905 468 CDD ThiF_MoeB_HesA_family 73 301 - -
Cma16g00905 468 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 32 468 IPR028885 GO:0002143|GO:0004792|GO:0005829
Cma16g00905 468 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 5 454 IPR045886 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00905 K11996 MOCS3, UBA4; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] - csv:101220467 797.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01661 Cma-Chr6:10270420 Cma16g00905 Cma-Chr16:6646511 6.40E-12 dispersed
Cma16g00905 Cma-Chr16:6646511 Cma20g00825 Cma-Chr20:3926872 7.05E-18 dispersed
Cma16g00905 Cma-Chr16:6646511 Cma02g00376 Cma-Chr2:1895077 5.12E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g00511 . 59 371 Sulfurtransferasese/Rhodanese AT1G79230 71.6 1.9e-137 486.1
Cma16g00370 . 59 341 Sulfurtransferasese/Rhodanese AT1G79230 61.3 1.8e-111 399.8
Cma04g00511 . 59 316 Sulfurtransferasese/Rhodanese AT1G16460 69.4 8.9e-104 374.0
Cma16g00370 . 59 288 Sulfurtransferasese/Rhodanese AT1G16460 57.7 8.4e-78 287.7
Cma13g01050 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 61.6 2.6e-86 316.2
Cma18g00031 . 39 315 Sulfurtransferasese/Rhodanese AT5G23060 57.3 1.5e-73 273.9
Cma14g02099 . 1 374 Sulfurtransferasese/Rhodanese AT4G01050 59.3 1.7e-111 400.6
Cma11g01228 . 36 639 Sulfurtransferasese/Rhodanese AT1G09280 63.7 1.2e-222 770.0
Cma04g01058 . 90 449 Sulfurtransferasese/Rhodanese AT2G40760 74.1 1.0e-155 547.4
Cma11g01009 . 82 428 Sulfurtransferasese/Rhodanese AT1G17850 66.0 3.5e-145 512.3
Cma03g00100 . 61 259 Sulfurtransferasese/Rhodanese AT2G42220 75.4 2.4e-84 309.3
Cma14g00066 . 4 215 Sulfurtransferasese/Rhodanese AT3G08920 58.0 9.2e-67 250.8
Cma10g00088 . 1 295 Sulfurtransferasese/Rhodanese AT4G24750 66.4 9.7e-112 400.6
Cma02g01280 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 64.3 9.7e-83 304.3
Cma16g00905 . 118 468 Sulfurtransferasese/Rhodanese AT5G55130 71.8 4.0e-147 518.5
Cma16g00031 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.6 1.1e-78 290.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009966 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00905 Cma_Chr16 FPKM 26.587284 27.72418 28.75013 31.940128 27.968584 28.60672 28.172131 59.896851 59.827507 58.077641