Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00908 ATGAGAAGAGGGAGAGGGGCGGCGACGGCGACGGCTGCGGCGCGTGAGGCAGCACCTCCCGGATCGGAGAGGAGATACAGAGGAGTTCGAAAGCGGCCATGGGGTAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTATGGCTAGGGACCTTCGATTCCGCAGAGGACGCCGCCCGTGCTTACGACAACGCCGCTATAACCCTCCGTGGCCCTAAAGCTAAAACCAACTTCCCTCTCGCTAATCCCATCTCCTTCTTCGATTACCCTCCTTATCCTCACCCTCACCCGCACCCTCATCCCGTCAACGCTCCAGATCCCTTCCTCGATCCTCGATTTCAGATAAATAACCCTCACAGACCTACTTCCAGCAGTTTGAGCTCTACCGTCGAATCCTTCAGTGGGCCCCACCCTCCTTCTGCCGCTGCCACAACCGCTTCTCCCTCCCGCCGCTACCCACGCACGCCGCCTCTCCTCCCTGAGGATTGTCATAGCGACTGCGATTCCTCCTCCTCCGTCATCGACGACGGAGACGACATAGCCTCCTCCTCCATGGTCCCTCGGAAACCCCCTCTGCCGTTCGATCTGAACATTCCACCCTCCGAACTTCTTGATTTGGCCGCCGATGATCTTGGATGTACCGCCTTGTGCCTCTGA 666 58.86 MRRGRGAATATAAAREAAPPGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLANPISFFDYPPYPHPHPHPHPVNAPDPFLDPRFQINNPHRPTSSSLSSTVESFSGPHPPSAAATTASPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSMVPRKPPLPFDLNIPPSELLDLAADDLGCTALCL 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6781618 6782283 + CmaCh16G009080.1 Cma16g00908 311506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00908 221 MobiDBLite consensus disorder prediction 119 154 - -
Cma16g00908 221 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Cma16g00908 221 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Cma16g00908 221 MobiDBLite consensus disorder prediction 100 196 - -
Cma16g00908 221 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Cma16g00908 221 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Cma16g00908 221 MobiDBLite consensus disorder prediction 1 27 - -
Cma16g00908 221 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Cma16g00908 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 1 199 - -
Cma16g00908 221 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 199 - -
Cma16g00908 221 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Cma16g00908 221 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Cma16g00908 221 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00060 Cma-Chr2:289320 Cma16g00908 Cma-Chr16:6781618 8.41E-44 dispersed
Cma11g01938 Cma-Chr11:12753400 Cma16g00908 Cma-Chr16:6781618 1.64E-43 dispersed
Cma16g00908 Cma-Chr16:6781618 Cma20g00238 Cma-Chr20:1154440 1.05E-48 dispersed
Cma16g00908 Cma-Chr16:6781618 Cma06g00870 Cma-Chr6:4979860 1.87E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36579 PF00847 AP2 5.20E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00908 K09286 - csv:101219993 273.863