Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00908 | ATGAGAAGAGGGAGAGGGGCGGCGACGGCGACGGCTGCGGCGCGTGAGGCAGCACCTCCCGGATCGGAGAGGAGATACAGAGGAGTTCGAAAGCGGCCATGGGGTAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTATGGCTAGGGACCTTCGATTCCGCAGAGGACGCCGCCCGTGCTTACGACAACGCCGCTATAACCCTCCGTGGCCCTAAAGCTAAAACCAACTTCCCTCTCGCTAATCCCATCTCCTTCTTCGATTACCCTCCTTATCCTCACCCTCACCCGCACCCTCATCCCGTCAACGCTCCAGATCCCTTCCTCGATCCTCGATTTCAGATAAATAACCCTCACAGACCTACTTCCAGCAGTTTGAGCTCTACCGTCGAATCCTTCAGTGGGCCCCACCCTCCTTCTGCCGCTGCCACAACCGCTTCTCCCTCCCGCCGCTACCCACGCACGCCGCCTCTCCTCCCTGAGGATTGTCATAGCGACTGCGATTCCTCCTCCTCCGTCATCGACGACGGAGACGACATAGCCTCCTCCTCCATGGTCCCTCGGAAACCCCCTCTGCCGTTCGATCTGAACATTCCACCCTCCGAACTTCTTGATTTGGCCGCCGATGATCTTGGATGTACCGCCTTGTGCCTCTGA | 666 | 58.86 | MRRGRGAATATAAAREAAPPGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLANPISFFDYPPYPHPHPHPHPVNAPDPFLDPRFQINNPHRPTSSSLSSTVESFSGPHPPSAAATTASPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSMVPRKPPLPFDLNIPPSELLDLAADDLGCTALCL | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 6781618 | 6782283 | + | CmaCh16G009080.1 | Cma16g00908 | 311506 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00908 | 221 | MobiDBLite | consensus disorder prediction | 119 | 154 | - | - | |
Cma16g00908 | 221 | SUPERFAMILY | DNA-binding domain | 25 | 83 | IPR016177 | GO:0003677 | |
Cma16g00908 | 221 | ProSiteProfiles | AP2/ERF domain profile. | 25 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00908 | 221 | MobiDBLite | consensus disorder prediction | 100 | 196 | - | - | |
Cma16g00908 | 221 | Pfam | AP2 domain | 25 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00908 | 221 | Gene3D | AP2/ERF domain | 24 | 84 | IPR036955 | GO:0003700|GO:0006355 | |
Cma16g00908 | 221 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cma16g00908 | 221 | CDD | AP2 | 25 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00908 | 221 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED | 1 | 199 | - | - | |
Cma16g00908 | 221 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 1 | 199 | - | - | |
Cma16g00908 | 221 | PRINTS | Ethylene responsive element binding protein signature | 26 | 37 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00908 | 221 | PRINTS | Ethylene responsive element binding protein signature | 48 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00908 | 221 | SMART | rav1_2 | 25 | 88 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00060 | Cma-Chr2:289320 | Cma16g00908 | Cma-Chr16:6781618 | 8.41E-44 | dispersed | |
Cma11g01938 | Cma-Chr11:12753400 | Cma16g00908 | Cma-Chr16:6781618 | 1.64E-43 | dispersed | |
Cma16g00908 | Cma-Chr16:6781618 | Cma20g00238 | Cma-Chr20:1154440 | 1.05E-48 | dispersed | |
Cma16g00908 | Cma-Chr16:6781618 | Cma06g00870 | Cma-Chr6:4979860 | 1.87E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36579 | PF00847 | AP2 | 5.20E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00908 | K09286 | - | csv:101219993 | 273.863 |