Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00913 ATGGCGGTGGCAGATATTCAAAATCCTCTTCAAGGAGAAACCACATGCGGTACCCTATTGCAGAAACTGCAAGAAATTTGGGATGAAGTTGGTGAAAGTGATAAGGAACGAGATAAAATGCTGCTTCAGATAGATCAGGAATGTTTGGATGTCTATAAAAGGAAAGTTGAGCAAGCTGATAAGTCCAGGGCAAAGCTTCTGCAGTCTTTATCAGATGCAAAGCTTGAGCTTTCGAGTCTTCTATCTGCTCTTGGTGAAAAAAGTTTTTCTGAATTTCCTGAGAAGGCTTCTGGAACAATCAAAGAACAGCTTGCAGCCATAGCACCGGCTCTTGAACAGCTCTGGAAACAGAAAGAACAGAGGGTTAAGGAATTTTTTGACGTTCAATCAGAGATTCAGAAGATATGTGGGGAGATTTCTGGGAGTTTAAACCTTGGCGAGAATCCACTGGTAGATGAATCTCATCTTTCGGTAGAAAAGCTCGACGAATACCATTGCCAACTCCAGGAACTGCAGAAAGAAAAGAGTGATAGATTGCACAAAGTTCTTGAATTTGTGAGCACCGTGCATGATCTCTGTGCCGTCCTTGGAATCGATTTCTTTGCTACTGTAACTGAGGTTCACCCAAGCTTAAATGACGCAACTGGTGTGCAATCTAAAAGCATTAGCAATGACACTTTATCCAAGCTGGCAAAGATGGTCTTAGCACTGAAAGAAGATAAAAAGCAGAGGCTACATAAGCTTCAAGAATTGGCAACTCAGCTGATTGATCTTTGGAATTTAATGGACACCCCCTCGGAGGAAAGAAGTTTGTTTGACCATGTCACGTGTAACATATCAGCATCAGTAGATGAAGTGACTGTCCCAGGGGCGCTTGCTCTCGATTTGATTGAGCAGGCTGAGGTGGAGGTTGAGAGGCTTGATCAACTCAAGGCTAGTAAGATGAAGGAAATTGCATTCAAGAAGCAGTCTGAACTTGAAGAGATATTTTCTCATGCTCACATAGAAGTAGACCCAGATGCAGCTCGAGACAAAATTTTGGCACTGATTGATTCTGGTAACGTTGAGCCTGCTGAATTACTGGATGACATGGACGATCAAATAGCAAAGGCCAAAGAAGAAGTTCTCAGCAGGAAAGAAATATTGGACAAGGTTGAAAAATGGATGCTAGCATGTGAAGAAGAGAGCTGGCTAGAAGACTACAATCGGGATGATAACAGGTATAATGCTAGCAGAGGGGCTCATCTGAATCTCAAGCGAGCAGAGAAAGCTAGAATTCTGGTCAACAAAATTCCAGCTCTTGTTGACACTTTGATTGCCAAAACTCGGGCTTGGGAGGAAGATCGTGGCTTATCGTTTATTTACGACGGCGTTCCTCTCCTTGCTATGCTAGACGAATATACCATGCTCAGGCATGAAAGGGAGGAAGAAAAACGACGATCGAGGGACCAGAAAAAATTCCACGAACAACAAAGCACAGACCAAGAGGCCATCACCAATCCAAGACCTAGCCCTGTTCGACCCATTGGTACAAAGAAGGCAGCGGGGCCTCGTGCGAATGGAGCTGCGAACGGAACACCTAGCAGCAGACGGTTATCACTGAATCAGAATGGATCTAGATCAATGAATAAAGATGGAAGAAGGGATAGTATGAGACCAATGACACCCGTGAAGTACGATGCAATCTCGAAAGAAGACTCTGCATTGCACTTTTCAGGTACGGAGCCTGTTTCATCCTCACCATGA 1746 43.99 MAVADIQNPLQGETTCGTLLQKLQEIWDEVGESDKERDKMLLQIDQECLDVYKRKVEQADKSRAKLLQSLSDAKLELSSLLSALGEKSFSEFPEKASGTIKEQLAAIAPALEQLWKQKEQRVKEFFDVQSEIQKICGEISGSLNLGENPLVDESHLSVEKLDEYHCQLQELQKEKSDRLHKVLEFVSTVHDLCAVLGIDFFATVTEVHPSLNDATGVQSKSISNDTLSKLAKMVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERSLFDHVTCNISASVDEVTVPGALALDLIEQAEVEVERLDQLKASKMKEIAFKKQSELEEIFSHAHIEVDPDAARDKILALIDSGNVEPAELLDDMDDQIAKAKEEVLSRKEILDKVEKWMLACEEESWLEDYNRDDNRYNASRGAHLNLKRAEKARILVNKIPALVDTLIAKTRAWEEDRGLSFIYDGVPLLAMLDEYTMLRHEREEEKRRSRDQKKFHEQQSTDQEAITNPRPSPVRPIGTKKAAGPRANGAANGTPSSRRLSLNQNGSRSMNKDGRRDSMRPMTPVKYDAISKEDSALHFSGTEPVSSSP 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6855371 6860731 + CmaCh16G009130.1 Cma16g00913 311511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00913 581 Coils Coil 238 258 - -
Cma16g00913 581 MobiDBLite consensus disorder prediction 474 581 - -
Cma16g00913 581 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 4 581 IPR007145 GO:0000226|GO:0008017
Cma16g00913 581 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 505 - -
Cma16g00913 581 Coils Coil 297 317 - -
Cma16g00913 581 Gene3D - 367 499 - -
Cma16g00913 581 Coils Coil 56 76 - -
Cma16g00913 581 MobiDBLite consensus disorder prediction 522 541 - -
Cma16g00913 581 MobiDBLite consensus disorder prediction 474 492 - -
Cma16g00913 581 PANTHER MICROTUBULE-ASSOCIATED PROTEIN, MAP65/ASE1/PRC1-RELATED 4 581 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00913 K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein - csv:101217855 1038.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00076 Cma-Chr12:286067 Cma16g00913 Cma-Chr16:6855371 2.02E-167 dispersed
Cma15g00881 Cma-Chr15:4468560 Cma16g00913 Cma-Chr16:6855371 8.25E-177 dispersed
Cma16g00178 Cma-Chr16:772474 Cma16g00913 Cma-Chr16:6855371 1.87E-124 dispersed
Cma18g00827 Cma-Chr18:7222326 Cma16g00913 Cma-Chr16:6855371 0 transposed
Cma16g00913 Cma-Chr16:6855371 Cma06g00865 Cma-Chr6:4930925 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g576 . Blo03g01459 . . . . . Bma13g01091 Cmo16g00948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00849 . Bda12g00935 . . . . . . . . Cma16g00913 . Car16g00886 Cpe14g00738 . . . . . . . . . . . . . . . . . Chy06g01848 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003979 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00913 Cma_Chr16 FPKM 42.922264 48.444107 29.78484 29.685196 62.021198 59.967293 62.598 25.152508 24.437576 24.780708