Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00915 ATGGCCGAACCCATGGAGGAAACCACGGTTGTTGATGGCGAACCCACTCTACTCGCTGGCGAGAAGAGGTCAATTGAGATTCACGGGGACGATGAACTTGCGGAGCCTCAGTTAAGAAAGAAGCCCCGTAATGGTTGCGAGTTGGGTCCTAATCTCCGGAGGGTTGCGGAGATTGTGTTGGTCATGTCCACAATGACGGCGCTGCGTGCTGGAAAGAAGCCTACTGATGCCGAGGTTGAATTAATGGCTGAGGCTAGGGCTAAGTTGGTTCAGATTTGTGAAGGATTGGCTCCCAAGGATATCGTGGGAAGGGAAGGAATTAGCTCTTTGATTGAAGATTTGGGGCTGCATGGTAACATTAGGGATCAGAAGTTAGGGTTTCGCGGTCCCAGGTTGACGATAGCGGAGAAATTGGCGCAGACAAAGAAGAAGATGGAAGATTCCAAGAAATATATCCCACCTTCGGGTTATGGATCTCATCCAACCCAAAAACATATTATTTCATCGATTGAGAACCGTGGGCCATTGCCTTCTGTACGGATGTTTCCCTCAGACAAATCAAGTCCTGTCCCTAATTCTGTGGGAGGCACTGCCGGTACTCTGCCTTCAGGTCATGTTTCTGTTGCTGGTTCTTCGTCTATGCAGGTTCAACCGCAACTAACAGGCAATGAAGTCAGAGCTCATAATATTTCAAGTGGATTTCCAATTAATCAACAAGGAAGGGACTCTTCCTCACTCTTGCATGGCATTGAAAGACCACTAAATGGGACATATGGATCTCAAATGCAAGTTAACTCTTCCGTAAATCACTCTCTGGCGAGTGCTCCAACCTGGTCTGCTCAAACTCAATCTGCCTTGTCGGCTAAAGGTGGGCCAGAACACAAGTTTCCAAATCATTCTGCTGCTAATGCTCAGGGAACCACAGATTCAAGAGCCTTAAGATCGTCTTCTCAAGCAGCAAGGGACCAAAGCTTTAGACCTCCAATTCCTCAAACTGGGACAGGAAATATGGCTGGTTTGCAGCCGCCGCATTTACAGAGCATAAATTTTGTGCAAGGGCCTTCAGTTTCTAATAGCCACAATGAAATTGTCAAAATTATTCAGAAGCTGTTACAGCCACAGCTTCCTGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTGACTTGCCAAACTTGTCAAGTTACCATCAATGAGATTGATAGTGTACTTATATGTGATGCTTGTGAGAAAGGATTTCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCGATTCCTAGGGGGGAGTGGCACTGCCCAAGATGCTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATACGGGCGTGTCATGAGGAGTAACCCCCCACCAAAATTATCTGTCAATACCAGTGGATCTCAGCCACCAGAGAAGAGTTTAGGAGCCGCTGTGGAACAAAAGGCCAGTGCTGGACAGCTGAAGTTAGTTTCTAATGGAGGTTTAGATTTGCTAAGTCACCACCAGCCTGCTGAGGATGGAAGCAACGCCAATGAATCATCTGGTATCAAAATTCCAAATGCGGAAGAAGCTCATGGAAATAATTTTTTACCAATTAGGAAAGACATAGATGAGAAACCAACCTCTTCGACTTCCCTGAATACCCCAGCCAAATCCTTGGGGATGGTTTGTGAACCCTCTTCTGCTGAGATATCAAGTGAAGTATCTGCTCAGCACGTTAAAAGTTCTCAAGCACCAATAGGTGAAGATGGATCCTCAGCAAAAGCAGAGCCTCCAGAAGAATCTCAAACTGCGGGTGACAATTCTAGTAACCCTAAACCCCCTGACATTCCTCAAATTCTTGATCAGAAAATGGGTTCTAATGGTCCAGAGGAACCTTACTTAACAGAAAGTTCTCATGACACTTCAAATGTGAAGAAAGATGGCCATGAAGTTCTGCAGGAGAATAATGTTGAAAATTTTGAAGCTAGCATCGTAAATAGAGAGCAGTCCGGGACTTCTTCCAATGATCTGCATGATGTTGAATGGATTGGAGACCCACATCAGCTGACAGATATGAGGGCATATTACAAATCCTGTCTTGTTGATGGGGTTACATATAAAGTTGAAGAATTTTCTCTTTTTCACTCCAACAACGGGAAATTGATGCCCTATAGGCTTCAGTCCTTGTACCATGAATATGAAAGTGGATTGAACTGGGCTATTCTTAAGCAGTGTTACTTTCATGAGGACTTGCCCAAGGAAGTTGCCCACCTCTGCCCGTGCTCCCCTGAACAAAATGAGGTATATACATCCGATGGCGACATTTGTTTAGCTGTGGGCTTAATTCGAAGCCCATGTGAAGTTCTTCCTGTTGCCAAGTATAAAGAACATGAAAGACGAAAACAATTGGGTCCTGGGGCAGATGATGGAATAAAGCCAACTTTCCTGTGCAAATGGTTTTATACTGAAGCTAACAAAGAATTTGTACCTTTTACTGATGCCGTATGTGAAAGCTTCTCAGTGATGCAGGGCGACCTGCAATGA 2544 44.85 MAEPMEETTVVDGEPTLLAGEKRSIEIHGDDELAEPQLRKKPRNGCELGPNLRRVAEIVLVMSTMTALRAGKKPTDAEVELMAEARAKLVQICEGLAPKDIVGREGISSLIEDLGLHGNIRDQKLGFRGPRLTIAEKLAQTKKKMEDSKKYIPPSGYGSHPTQKHIISSIENRGPLPSVRMFPSDKSSPVPNSVGGTAGTLPSGHVSVAGSSSMQVQPQLTGNEVRAHNISSGFPINQQGRDSSSLLHGIERPLNGTYGSQMQVNSSVNHSLASAPTWSAQTQSALSAKGGPEHKFPNHSAANAQGTTDSRALRSSSQAARDQSFRPPIPQTGTGNMAGLQPPHLQSINFVQGPSVSNSHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDSVLICDACEKGFHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGSQPPEKSLGAAVEQKASAGQLKLVSNGGLDLLSHHQPAEDGSNANESSGIKIPNAEEAHGNNFLPIRKDIDEKPTSSTSLNTPAKSLGMVCEPSSAEISSEVSAQHVKSSQAPIGEDGSSAKAEPPEESQTAGDNSSNPKPPDIPQILDQKMGSNGPEEPYLTESSHDTSNVKKDGHEVLQENNVENFEASIVNREQSGTSSNDLHDVEWIGDPHQLTDMRAYYKSCLVDGVTYKVEEFSLFHSNNGKLMPYRLQSLYHEYESGLNWAILKQCYFHEDLPKEVAHLCPCSPEQNEVYTSDGDICLAVGLIRSPCEVLPVAKYKEHERRKQLGPGADDGIKPTFLCKWFYTEANKEFVPFTDAVCESFSVMQGDLQ 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6881544 6894516 + CmaCh16G009150.1 Cma16g00915 311513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00915 847 MobiDBLite consensus disorder prediction 463 477 - -
Cma16g00915 847 MobiDBLite consensus disorder prediction 173 219 - -
Cma16g00915 847 SMART PHD_3 394 442 IPR001965 -
Cma16g00915 847 MobiDBLite consensus disorder prediction 275 344 - -
Cma16g00915 847 MobiDBLite consensus disorder prediction 596 615 - -
Cma16g00915 847 MobiDBLite consensus disorder prediction 232 262 - -
Cma16g00915 847 Pfam PHD-finger 395 442 IPR019787 -
Cma16g00915 847 ProSiteProfiles Zinc finger PHD-type profile. 392 444 IPR019787 -
Cma16g00915 847 MobiDBLite consensus disorder prediction 300 344 - -
Cma16g00915 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 456 IPR013083 -
Cma16g00915 847 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 832 - -
Cma16g00915 847 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 832 - -
Cma16g00915 847 ProSitePatterns Zinc finger PHD-type signature. 395 441 IPR019786 -
Cma16g00915 847 ProSiteProfiles BAH domain profile. 704 832 IPR001025 GO:0003682
Cma16g00915 847 MobiDBLite consensus disorder prediction 503 644 - -
Cma16g00915 847 SUPERFAMILY FYVE/PHD zinc finger 385 451 IPR011011 -
Cma16g00915 847 MobiDBLite consensus disorder prediction 568 588 - -
Cma16g00915 847 Gene3D - 673 839 IPR043151 -
Cma16g00915 847 MobiDBLite consensus disorder prediction 185 219 - -
Cma16g00915 847 MobiDBLite consensus disorder prediction 452 486 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00915 - - - csv:101222588 1354.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00915 Cma-Chr16:6881544 Cma09g01051 Cma-Chr9:5486866 1.17E-06 dispersed
Cma16g00915 Cma-Chr16:6881544 Cma02g00623 Cma-Chr2:3756334 2.60E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g579 . . . . Bpe09g00149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00915 . Car16g00888 Cpe14g00740 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36580 PF00628 PHD 2.90E-08 CL0390 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00915 Cma_Chr16 FPKM 21.338997 22.623585 26.124813 26.674809 25.752499 22.797812 25.544874 34.671925 31.935513 32.270874