Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00924 ATGGCTTCTTCTGATTTATGGTTAAAGGAATATAATGAAGCCTCGAAGCTTGGGGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCGTTCCTGCAACTGGACCAGAAGCCCAACGTCATGCTTCCACGATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTTTTGCTTGGCCCGGATATGAAATCAGCGGATGTAATGAGCAAAACAGCTGAACTAGACAACCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGTTGGAGGAGACTATAAGAAGTACCAAACATATTGCTTTGGCAGTTAATGAAGAACTCGATCTTCATACTCGCCTAATTGATGACTTAGACCAACATGTCGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGGAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTGGGAATGCTTCTGTCTGTGGTAGGTATTGTGGGTTTAATTGCTGTCATATGGCGACTCATTCGATACTTGTAA 567 43.39 MASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLESLLLKLPVKQPLLLGPDMKSADVMSKTAELDNQGLVEQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWRLIRYL 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7034135 7036888 - CmaCh16G009240.1 Cma16g00924 311522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00924 188 Gene3D - 94 156 - -
Cma16g00924 188 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 73 183 - -
Cma16g00924 188 PANTHER SYNTAXIN 73 183 IPR045242 -
Cma16g00924 188 Pfam SNARE domain 129 179 IPR000727 -
Cma16g00924 188 Coils Coil 102 122 - -
Cma16g00924 188 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 72 - -
Cma16g00924 188 PANTHER SYNTAXIN 1 72 IPR045242 -
Cma16g00924 188 SMART tSNARE_6 87 154 IPR000727 -
Cma16g00924 188 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 92 154 IPR000727 -
Cma16g00924 188 CDD SNARE_Qc 97 151 - -
Cma16g00924 188 SUPERFAMILY SNARE fusion complex 91 154 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01111 Cma16g00924 CCT
Cma09g00975 Cma16g00924 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00975 Cma-Chr9:4947413 Cma16g00924 Cma-Chr16:7034135 6.38E-78 dispersed
Cma16g00924 Cma-Chr16:7034135 Cma17g00042 Cma-Chr17:187111 2.42E-07 dispersed
Cma16g00924 Cma-Chr16:7034135 Cma01g01111 Cma-Chr1:8131197 8.34E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00924 K08503 - csv:101223140 305.064