Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00924 | ATGGCTTCTTCTGATTTATGGTTAAAGGAATATAATGAAGCCTCGAAGCTTGGGGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCGTTCCTGCAACTGGACCAGAAGCCCAACGTCATGCTTCCACGATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTTTTGCTTGGCCCGGATATGAAATCAGCGGATGTAATGAGCAAAACAGCTGAACTAGACAACCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGTTGGAGGAGACTATAAGAAGTACCAAACATATTGCTTTGGCAGTTAATGAAGAACTCGATCTTCATACTCGCCTAATTGATGACTTAGACCAACATGTCGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGGAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTGGGAATGCTTCTGTCTGTGGTAGGTATTGTGGGTTTAATTGCTGTCATATGGCGACTCATTCGATACTTGTAA | 567 | 43.39 | MASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLESLLLKLPVKQPLLLGPDMKSADVMSKTAELDNQGLVEQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWRLIRYL | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 7034135 | 7036888 | - | CmaCh16G009240.1 | Cma16g00924 | 311522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00924 | 188 | Gene3D | - | 94 | 156 | - | - | |
Cma16g00924 | 188 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 73 | 183 | - | - | |
Cma16g00924 | 188 | PANTHER | SYNTAXIN | 73 | 183 | IPR045242 | - | |
Cma16g00924 | 188 | Pfam | SNARE domain | 129 | 179 | IPR000727 | - | |
Cma16g00924 | 188 | Coils | Coil | 102 | 122 | - | - | |
Cma16g00924 | 188 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 72 | - | - | |
Cma16g00924 | 188 | PANTHER | SYNTAXIN | 1 | 72 | IPR045242 | - | |
Cma16g00924 | 188 | SMART | tSNARE_6 | 87 | 154 | IPR000727 | - | |
Cma16g00924 | 188 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 92 | 154 | IPR000727 | - | |
Cma16g00924 | 188 | CDD | SNARE_Qc | 97 | 151 | - | - | |
Cma16g00924 | 188 | SUPERFAMILY | SNARE fusion complex | 91 | 154 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01111 | Cma16g00924 | CCT | |
Cma09g00975 | Cma16g00924 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00975 | Cma-Chr9:4947413 | Cma16g00924 | Cma-Chr16:7034135 | 6.38E-78 | dispersed | |
Cma16g00924 | Cma-Chr16:7034135 | Cma17g00042 | Cma-Chr17:187111 | 2.42E-07 | dispersed | |
Cma16g00924 | Cma-Chr16:7034135 | Cma01g01111 | Cma-Chr1:8131197 | 8.34E-82 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00924 | K08503 | - | csv:101223140 | 305.064 |