Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00937 ATGATAGCTCCAGCAGATAGCCCCAATACAGATGGAATTCACATTTTCGAGTCAAGTGGTATCAATATTATGCATTCAGTGATTGGCACTAGAGACGATTGCATCTCTCTAGGCCCTGGAAGTAAATTCATCAACATAACAGACGTCGAGTGTGGTCCAAGTCATGGAATTAGCATCAGTAGCCTCGAAAAGTACCCAAATGAAGATGTCTCTGAAGTCGCAATAAGAGACCCTACATTTGTTGGCATAGACAACGGTGTGAGGAACAAAACATGGTCAACTTCATTTTCTAGTTCTGTTAGTAAGATCGCTTTTCTCAATCTCGAAATGAAGGAGCTTTGTGTCGCACTCAAACACCCTCGTCTTGTTGATCGAACGTTCCTTGCTCGACCTCAACATGAAGGCTTTGGTGCTGTCGTCAGAAGAAGCATCGGCAGGTATGAACTCAAATACTTTGATCCATTCCTAGTTTTGGACGAGTTCTTTGTGACTGCGCCTGCTGGTTTTCCTGATCATCCACATCGAGGATTTGAAACTGTCACCTACATGCTGCAGGGAGCCATGACCCACGAAGATTTTCAAGGCCATAAAGGAACAATTGGAGCTGGGGACTTGCAATGGATGACTGCTGGCAAAGGCATTGTCCACTCTGAAATGCCTGCCTCCCATGGCACACAACATGGCTTACAACTTTGGATCAATCTATCCTCCAAACACAAAATGATAGAGCCGAGGTATCAAGAAGTACATAACAACGACGTAGTGGAAGCTAAAAAAGACGGAGTAAAAGTGAGAGTGATAGCGGGAGAAGCCATGGGAGCACGATCCCCAATTTACACCAAGACTCTGACCATGTACTTGGATTTCACACTCGACCCAGGATCTCACATTGAGCAGTCGATCCCGATGGGGTGGAATGCGTTCGTGTACGTGCTAGAAGGTGAGGACGGAGTGTTCGGGAGCATGAAATCGATGCCGATTGCATCACATCACATTGTTTTGTTAGGGAATGGGGATGGATTGGAGGCTTGGAACAAGTCTTCCTCCGAAGTCCTGAGGTTTATATTGGTTGGGGGTGAGCCATTGAATGAGAGTGTTGTGCAGATGGGGCCATTTGTGATGAACACTGAAGAAGAGATTGACCAAACCATTGAGGATTTTGAGAATTGTACCAATGGGTTTGAGAGAGCAAAGCATTGGAGTTCACAAGCTTAA 1215 45.51 MIAPADSPNTDGIHIFESSGINIMHSVIGTRDDCISLGPGSKFINITDVECGPSHGISISSLEKYPNEDVSEVAIRDPTFVGIDNGVRNKTWSTSFSSSVSKIAFLNLEMKELCVALKHPRLVDRTFLARPQHEGFGAVVRRSIGRYELKYFDPFLVLDEFFVTAPAGFPDHPHRGFETVTYMLQGAMTHEDFQGHKGTIGAGDLQWMTAGKGIVHSEMPASHGTQHGLQLWINLSSKHKMIEPRYQEVHNNDVVEAKKDGVKVRVIAGEAMGARSPIYTKTLTMYLDFTLDPGSHIEQSIPMGWNAFVYVLEGEDGVFGSMKSMPIASHHIVLLGNGDGLEAWNKSSSEVLRFILVGGEPLNESVVQMGPFVMNTEEEIDQTIEDFENCTNGFERAKHWSSQA 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7193013 7196701 + CmaCh16G009370.1 Cma16g00937 311535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00937 404 PANTHER - 110 404 - -
Cma16g00937 404 SUPERFAMILY RmlC-like cupins 121 402 IPR011051 -
Cma16g00937 404 CDD cupin_pirin_C 284 361 - -
Cma16g00937 404 SUPERFAMILY Pectin lyase-like 2 113 IPR011050 -
Cma16g00937 404 CDD cupin_pirin_N 138 235 - -
Cma16g00937 404 PANTHER PIRIN-RELATED 110 404 IPR012093 -
Cma16g00937 404 Gene3D Jelly Rolls 255 362 IPR014710 -
Cma16g00937 404 Pfam Pirin 140 233 IPR003829 -
Cma16g00937 404 Pfam Glycosyl hydrolases family 28 3 113 IPR000743 GO:0004650|GO:0005975
Cma16g00937 404 Gene3D Jelly Rolls 134 388 IPR014710 -
Cma16g00937 404 Pfam Pirin C-terminal cupin domain 286 393 IPR008778 -
Cma16g00937 404 Gene3D - 1 119 IPR012334 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01099 Cma16g00937 CCT
Cma09g00981 Cma16g00937 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01099 Cma-Chr1:8058082 Cma16g00937 Cma-Chr16:7193013 1.41E-165 dispersed
Cma06g01623 Cma-Chr6:10098128 Cma16g00937 Cma-Chr16:7193013 6.98E-139 dispersed
Cma09g00981 Cma-Chr9:4993888 Cma16g00937 Cma-Chr16:7193013 1.12E-165 dispersed
Cma14g01512 Cma-Chr14:11428180 Cma16g00937 Cma-Chr16:7193013 9.68E-138 dispersed
Cma16g00937 Cma-Chr16:7193013 Cma16g00929 Cma-Chr16:7068084 8.84E-49 dispersed
Cma16g00935 Cma-Chr16:7181945 Cma16g00937 Cma-Chr16:7193013 2.00E-46 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00937 K06911 - csv:101204082 494.582