Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00937 | ATGATAGCTCCAGCAGATAGCCCCAATACAGATGGAATTCACATTTTCGAGTCAAGTGGTATCAATATTATGCATTCAGTGATTGGCACTAGAGACGATTGCATCTCTCTAGGCCCTGGAAGTAAATTCATCAACATAACAGACGTCGAGTGTGGTCCAAGTCATGGAATTAGCATCAGTAGCCTCGAAAAGTACCCAAATGAAGATGTCTCTGAAGTCGCAATAAGAGACCCTACATTTGTTGGCATAGACAACGGTGTGAGGAACAAAACATGGTCAACTTCATTTTCTAGTTCTGTTAGTAAGATCGCTTTTCTCAATCTCGAAATGAAGGAGCTTTGTGTCGCACTCAAACACCCTCGTCTTGTTGATCGAACGTTCCTTGCTCGACCTCAACATGAAGGCTTTGGTGCTGTCGTCAGAAGAAGCATCGGCAGGTATGAACTCAAATACTTTGATCCATTCCTAGTTTTGGACGAGTTCTTTGTGACTGCGCCTGCTGGTTTTCCTGATCATCCACATCGAGGATTTGAAACTGTCACCTACATGCTGCAGGGAGCCATGACCCACGAAGATTTTCAAGGCCATAAAGGAACAATTGGAGCTGGGGACTTGCAATGGATGACTGCTGGCAAAGGCATTGTCCACTCTGAAATGCCTGCCTCCCATGGCACACAACATGGCTTACAACTTTGGATCAATCTATCCTCCAAACACAAAATGATAGAGCCGAGGTATCAAGAAGTACATAACAACGACGTAGTGGAAGCTAAAAAAGACGGAGTAAAAGTGAGAGTGATAGCGGGAGAAGCCATGGGAGCACGATCCCCAATTTACACCAAGACTCTGACCATGTACTTGGATTTCACACTCGACCCAGGATCTCACATTGAGCAGTCGATCCCGATGGGGTGGAATGCGTTCGTGTACGTGCTAGAAGGTGAGGACGGAGTGTTCGGGAGCATGAAATCGATGCCGATTGCATCACATCACATTGTTTTGTTAGGGAATGGGGATGGATTGGAGGCTTGGAACAAGTCTTCCTCCGAAGTCCTGAGGTTTATATTGGTTGGGGGTGAGCCATTGAATGAGAGTGTTGTGCAGATGGGGCCATTTGTGATGAACACTGAAGAAGAGATTGACCAAACCATTGAGGATTTTGAGAATTGTACCAATGGGTTTGAGAGAGCAAAGCATTGGAGTTCACAAGCTTAA | 1215 | 45.51 | MIAPADSPNTDGIHIFESSGINIMHSVIGTRDDCISLGPGSKFINITDVECGPSHGISISSLEKYPNEDVSEVAIRDPTFVGIDNGVRNKTWSTSFSSSVSKIAFLNLEMKELCVALKHPRLVDRTFLARPQHEGFGAVVRRSIGRYELKYFDPFLVLDEFFVTAPAGFPDHPHRGFETVTYMLQGAMTHEDFQGHKGTIGAGDLQWMTAGKGIVHSEMPASHGTQHGLQLWINLSSKHKMIEPRYQEVHNNDVVEAKKDGVKVRVIAGEAMGARSPIYTKTLTMYLDFTLDPGSHIEQSIPMGWNAFVYVLEGEDGVFGSMKSMPIASHHIVLLGNGDGLEAWNKSSSEVLRFILVGGEPLNESVVQMGPFVMNTEEEIDQTIEDFENCTNGFERAKHWSSQA | 404 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 7193013 | 7196701 | + | CmaCh16G009370.1 | Cma16g00937 | 311535 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00937 | 404 | PANTHER | - | 110 | 404 | - | - | |
Cma16g00937 | 404 | SUPERFAMILY | RmlC-like cupins | 121 | 402 | IPR011051 | - | |
Cma16g00937 | 404 | CDD | cupin_pirin_C | 284 | 361 | - | - | |
Cma16g00937 | 404 | SUPERFAMILY | Pectin lyase-like | 2 | 113 | IPR011050 | - | |
Cma16g00937 | 404 | CDD | cupin_pirin_N | 138 | 235 | - | - | |
Cma16g00937 | 404 | PANTHER | PIRIN-RELATED | 110 | 404 | IPR012093 | - | |
Cma16g00937 | 404 | Gene3D | Jelly Rolls | 255 | 362 | IPR014710 | - | |
Cma16g00937 | 404 | Pfam | Pirin | 140 | 233 | IPR003829 | - | |
Cma16g00937 | 404 | Pfam | Glycosyl hydrolases family 28 | 3 | 113 | IPR000743 | GO:0004650|GO:0005975 | |
Cma16g00937 | 404 | Gene3D | Jelly Rolls | 134 | 388 | IPR014710 | - | |
Cma16g00937 | 404 | Pfam | Pirin C-terminal cupin domain | 286 | 393 | IPR008778 | - | |
Cma16g00937 | 404 | Gene3D | - | 1 | 119 | IPR012334 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01099 | Cma16g00937 | CCT | |
Cma09g00981 | Cma16g00937 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01099 | Cma-Chr1:8058082 | Cma16g00937 | Cma-Chr16:7193013 | 1.41E-165 | dispersed | |
Cma06g01623 | Cma-Chr6:10098128 | Cma16g00937 | Cma-Chr16:7193013 | 6.98E-139 | dispersed | |
Cma09g00981 | Cma-Chr9:4993888 | Cma16g00937 | Cma-Chr16:7193013 | 1.12E-165 | dispersed | |
Cma14g01512 | Cma-Chr14:11428180 | Cma16g00937 | Cma-Chr16:7193013 | 9.68E-138 | dispersed | |
Cma16g00937 | Cma-Chr16:7193013 | Cma16g00929 | Cma-Chr16:7068084 | 8.84E-49 | dispersed | |
Cma16g00935 | Cma-Chr16:7181945 | Cma16g00937 | Cma-Chr16:7193013 | 2.00E-46 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00937 | K06911 | - | csv:101204082 | 494.582 |