Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00941 ATGTTTCACGATTCAATCTGTTCTTTCTTTTTAGCCTGTCGGATTCTATCTGAATTTTCGGTTCATAATCGCTCCCTTTTGTGTCTTCTTACCTCAATCCACATTTTCCTTCCAACTAGATTGGATTGTGTTTTTCTATTTCAGATTTCGGATTTGGGATCGGAAAAGATGGAATCAGATCTTGGCAAACTCTTTATTGGCGGAATTTCTTGGGATACTGATGAAGAACGTCTTAGGGATTATTTTGGAAACTATGGCGAAGTGGTTGAAGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGTTGTTGCTGAGAGAGTCATTTTGGAGAAGCATATCATCGATGGCCGCACTGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAACATTGGTAGTAGCATTCAAGGTTCTCCTAGCTCGGGACGAACGAAAAAGATTTTTGTTGGAGGTTTAGCTTCAACAGTCACAGAGGCAGACTTTCAGAAGTACTTTGATCAGTTTGGCACAATCACTGATGTTGTTGTTATGTATGATCACAGCACGCAAAGGCCGAGAGGTTTTGGCTTCATTACGTACGACTCGGAGGAGGTCGTCGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAAAGAGCAATCCCAAAAGAGCAAACCCCAGGGCCTAACCGGAGCCCTCTTGTAGGATATAACTTCGGTATGAGTAGAGCTAGTGGATTTCTTAACAACTATACTCAAGGCTATAATATGAGTCCTCTCGGAGGTATTGGAATGCGGTCCGATGGTAGGTTGAGTCCTTTTCTTAGCCCTCGAACCGGGGTTCCTCCTTTAGGTTTGAATTTTGAGCAAGGGCTGAGGCAAGGCTATGGTAGGACTATGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAGTTCCTATTATAATGGCAATTCGAATAGGTACATTGCCCCGATTGGCTATAGCGGAGGAAATGGACGAGGCGATTCTCCGTTAAACTCGAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACTGCTTCCGTGAACTCTTCTGTCTCTGGAATGGGTAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAATTTGCCTGCTGTTTCTAATCATGTTGGAGGGGAGAATGTTCCTGATAATGGATATGCAGTTCGAGACAATGGCGTCGGGTTCAGAGGAGGCTATGGAGGAAATGTAGTCTCGAATGCAACACGAAAAGCATTTGCTGAAACAACCAATGGTTTCGAGAGGTCATACAGGGAATTATATCGTGATCAAGTCGTGCACAATGATGTAACTTGGCAGTCTACCACTCCTGAACTCGATGATTCTATGGCTTTTGGTTATGGTCTTGGTAACCTCGCTTCAGATGATCCAACCAAAAGTTCAGAGAGTTCTCTAGCAAATTACGACATTTCGAGCAGACAATCAACTAGAGGAATTGCTGCGTAG 1554 43.44 MFHDSICSFFLACRILSEFSVHNRSLLCLLTSIHIFLPTRLDCVFLFQISDLGSEKMESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVAERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEVKRAIPKEQTPGPNRSPLVGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFLSPRTGVPPLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSSYYNGNSNRYIAPIGYSGGNGRGDSPLNSSTWNVWGNGSMSTASVNSSVSGMGNFRVAYGNNDDNWNLPAVSNHVGGENVPDNGYAVRDNGVGFRGGYGGNVVSNATRKAFAETTNGFERSYRELYRDQVVHNDVTWQSTTPELDDSMAFGYGLGNLASDDPTKSSESSLANYDISSRQSTRGIAA 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7238076 7240891 - CmaCh16G009410.1 Cma16g00941 311539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00941 517 CDD RRM1_hnRNPA_hnRNPD_like 64 134 - -
Cma16g00941 517 Gene3D - 62 144 IPR012677 -
Cma16g00941 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 138 IPR000504 GO:0003723
Cma16g00941 517 CDD RRM2_DAZAP1 161 240 IPR034131 GO:0003723
Cma16g00941 517 SUPERFAMILY RNA-binding domain, RBD 163 425 IPR035979 GO:0003676
Cma16g00941 517 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 57 517 - -
Cma16g00941 517 SUPERFAMILY RNA-binding domain, RBD 48 160 IPR035979 GO:0003676
Cma16g00941 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 240 IPR000504 GO:0003723
Cma16g00941 517 Gene3D - 160 248 IPR012677 -
Cma16g00941 517 SMART rrm1_1 164 236 IPR000504 GO:0003723
Cma16g00941 517 SMART rrm1_1 63 134 IPR000504 GO:0003723
Cma16g00941 517 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 57 517 - -
Cma16g00941 517 MobiDBLite consensus disorder prediction 491 517 - -
Cma16g00941 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 130 IPR000504 GO:0003723
Cma16g00941 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 222 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00941 K14411 MSI; RNA-binding protein Musashi - csv:101220541 770.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00851 Cma-Chr6:4741928 Cma16g00941 Cma-Chr16:7238076 0 dispersed
Cma16g00941 Cma-Chr16:7238076 Cma18g00600 Cma-Chr18:5346837 1.71E-138 dispersed
Cma20g00678 Cma-Chr20:3114082 Cma16g00941 Cma-Chr16:7238076 5.29E-06 dispersed
Cma16g00941 Cma-Chr16:7238076 Cma20g00666 Cma-Chr20:3059027 5.54E-162 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g609 . . . . Bpe09g00137 . Bma10g00587 Bma13g01106 Cmo16g00980 Cmo06g00879 . . . . . . . . . . . . . . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 Cone6ag0030 Cone9ag0029 Cone14ag1200 Cone15ag1220 . Csa03g00443 . Cme06g02800 Blo07g00874 . Bda05g00687 Bda12g00948 . Bpe03g00761 . . . . . . Cma16g00941 . Car16g00905 Cpe14g00765 . Bhi11g00503 Tan01g1803 . . . . . . . . . . . . Lsi05g00527 . Chy06g01874 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003655 1 5 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 0 4 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00941 Cma_Chr16 FPKM 27.176104 30.443197 24.262323 24.894697 17.335859 18.820602 20.264275 29.77866 30.803047 30.666729