Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00942 ATGATGCCTAGTGTAACGACGGAGTCGTCCGAGAAGGACTCGGAGCCATTTGTAGAAGTGAATCCGACGGGTCGATACGGGCGATATGGCGAGCTTCTAGGGTCGGGAGCGGTGAAGAAAGTGTACCGAGCATTTGATCAAGAAGAAGGAATTGAGGTGGCTTGGAATCAAGTGAAATTAAGAAGCTTTTCAAATGATCCATCCATGATTGATAGGCTTTACTCGGAGGTGACATTGCTAAGAACCTTAAAGAACAATAACATCATTGCTTTGTACGATGTATGGCTTGACAAACTTCATGGAACCTTAAATTTCATTACCGAGGTTTGTACAAGTGGGAATCTTAGAGAATATAGGAAGAAACATAGGCAAGTTTCTTTGAAAGCCTTGAAGAAATGGTGTAAGCAAATTCTTAAGGGTTTGCATTATTTGCATACTCATGAGCCTTGTGTTATTCATAGAGATCTCAATTGTAGCAACCTCTTTGTCAATGGCAATGTTGGGCAGGTGAAGATTGGTGATTTGGGTATGGCTGCAACGGTGGGGAAGAATCACTCAGCTCATTCAGTGCTTGGGACACCGGAATTCATGGCACCTGAGCTATATGAAGAGCATTACACCGAGCTTGTGGACATATATTCATTTGGCATGTGTTTGCTTGAATTGGTCACCTTGGAAATTCCCTATAGTGAATGTGATAACGTTGCGAAAATCTATAAGAAAGTATGCTCGGGCATCAAGCCGTTGGCACTCGACAAGGTCAAGGACCTTGAGGTGAAGGCTTTCATTGAGAATTGCCTTGCTCCGTTCCAAGATCGGCCCTCAGCTGCCGACCTCCTCCGCCACCCGTTTTTCAGTGAAATTGACGACGACAACGACGATGAGGATAGTAATGATCGTTAG 903 44.19 MMPSVTTESSEKDSEPFVEVNPTGRYGRYGELLGSGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVTLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWCKQILKGLHYLHTHEPCVIHRDLNCSNLFVNGNVGQVKIGDLGMAATVGKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVCSGIKPLALDKVKDLEVKAFIENCLAPFQDRPSAADLLRHPFFSEIDDDNDDEDSNDR 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7260086 7261353 - CmaCh16G009420.1 Cma16g00942 311540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00942 300 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 299 - -
Cma16g00942 300 CDD STKc_WNK 25 285 - -
Cma16g00942 300 Gene3D Transferase(Phosphotransferase) domain 1 110 291 - -
Cma16g00942 300 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00942 300 SUPERFAMILY Protein kinase-like (PK-like) 29 291 IPR011009 -
Cma16g00942 300 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00942 300 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 299 - -
Cma16g00942 300 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00855 Cma-Chr6:4765519 Cma16g00942 Cma-Chr16:7260086 0 dispersed
Cma16g00942 Cma-Chr16:7260086 Cma13g00858 Cma-Chr13:7061331 6.18E-129 dispersed
Cma16g00942 Cma-Chr16:7260086 Cma20g00669 Cma-Chr20:3066602 2.65E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69205 PF00069 Pkinase 1.70E-50 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00942 K08867 - csv:101221172 526.554