Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00943 ATGGACCCCACTGAAGCTGCTTCCACCGCCGCTGCTGGCGCCAAGTACAAGCTCATGTCTCCGGCCAAGCTTCCGATCTTCCGCTCTCCTTGCATTACCATCCCTCCCGGCCTTAGCCCCTCTTCCTTTCTCGACTCTCCTGTTTTGCTTACTAACTTCAAGGTAGAGCCTTCTCCGACAACTGGGTCCTTTACCAAACTGCCAATGGCACGTGACTCTTCTAGCTTGGCTATTTATCCGATGACCACCATGGCTTGCTCAAATGCTAATGCCTCAGATGAAGGAAACTCCAACTACTTCGAGTTCAAGCCATATGTTGGACCAAATATGGTTCCTGCAGATATGAGTCATAGAAAAGATGAACAATCTTGTGAACTTCAAGTTCAAGGCCAACCTCAACCATTTACTGCTCCACCCATGACTAAAAGTGAGATCAATGTCATTTCAAATGATTCGAGTCGATCAACCCAGATGGATCCAGTTGCCTCAGGGGCTGCTGTTCCTGATGTTGATGGAGACGATTTCAATCATAGTCTGAACACAAATACCAGGGCTCAGGCCGCACAATCTGATCCAAAAGGCAGTGGCAGTCCAGTAGTTTCAGATAGAATATCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCAAGTTAAAGGGAGCGAATTTCCCCGTAGTTATTATAAATGTACACATCCTAACTGTGAAGTGAAAAAGCTCTTTGAGCGCTCTCACGATGGACAAATAACCGATATTGTCTATAAGGGTACTCATGATCATCCTAAGCTTCAGCCAAGTCGGCGATATTCTGCAGGTGCTTCTGTGAAAGATGGTCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGGTCGTGCAGCATATACACTCAGACAGTGCATTCCATTGAGCCAAATGGAACTCCCGAACGACTTGCTGCAAATGATAGCAACACTGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCCTGATGAGCTTGATGACGATGACATAATCATGAAGCGGAGGAAAATGGAACTTGGTGGTTTTGAGGCATGCCCAGCAATGGTTAGGCCAATTAGGGAACCGCGTGTCGTGGTTCAAACCTTAAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAACCCGAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGTCCTGTCAGAAAACATGTCGAAAGAGCATCTCATGACCCAAAAGCTGTTATAACTACATATGAAGGGAAACATAATCACGATGTCCCCACTGCAAAAACTAGTAGCCATGACGCTGCAGGCCCATTGAGAACCGCACCATTGAGGTATAGACTCGAAGACAGGGACACCGTAAGCCTTGATCTTGGCGTTGGCATTGGTGAAAATAGATCAAACGAGTACAGGCAGCAGGCTCTCGCTCCAAATGGCAATTTCAACTTCGAAGTAGTTCAAGAAAACTCAGCCCCAACATATTTCAGTGTTCACAATAGAGGTATGAACCAGCATGGACCAAGAGAGAGCTTGAGCGAGAGCCGAAGCATGGAGGTTGTTCCACTAAACCATTCGTCTCACCCATATCCGCCGAGCATCGGGAGAATACTAACAGGGCCATAG 1659 46.78 MDPTEAASTAAAGAKYKLMSPAKLPIFRSPCITIPPGLSPSSFLDSPVLLTNFKVEPSPTTGSFTKLPMARDSSSLAIYPMTTMACSNANASDEGNSNYFEFKPYVGPNMVPADMSHRKDEQSCELQVQGQPQPFTAPPMTKSEINVISNDSSRSTQMDPVASGAAVPDVDGDDFNHSLNTNTRAQAAQSDPKGSGSPVVSDRISDDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIVYKGTHDHPKLQPSRRYSAGASVKDGPDKPSPLTGQDDRSCSIYTQTVHSIEPNGTPERLAANDSNTEGAGTTLPCKNPDELDDDDIIMKRRKMELGGFEACPAMVRPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDAAGPLRTAPLRYRLEDRDTVSLDLGVGIGENRSNEYRQQALAPNGNFNFEVVQENSAPTYFSVHNRGMNQHGPRESLSESRSMEVVPLNHSSHPYPPSIGRILTGP 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7269003 7274618 + CmaCh16G009430.1 Cma16g00943 311541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00943 552 Gene3D WRKY domain 365 431 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00943 552 ProSiteProfiles WRKY domain profile. 373 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00943 552 MobiDBLite consensus disorder prediction 150 209 - -
Cma16g00943 552 SUPERFAMILY WRKY DNA-binding domain 203 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00943 552 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 6 523 - -
Cma16g00943 552 ProSiteProfiles WRKY domain profile. 200 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00943 552 MobiDBLite consensus disorder prediction 175 196 - -
Cma16g00943 552 SMART WRKY_cls 205 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00943 552 SMART WRKY_cls 378 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00943 552 Gene3D WRKY domain 198 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00943 552 MobiDBLite consensus disorder prediction 533 552 - -
Cma16g00943 552 MobiDBLite consensus disorder prediction 256 334 - -
Cma16g00943 552 Pfam WRKY DNA -binding domain 379 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00943 552 Pfam WRKY DNA -binding domain 206 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00943 552 MobiDBLite consensus disorder prediction 288 326 - -
Cma16g00943 552 SUPERFAMILY WRKY DNA-binding domain 370 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00943 552 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 6 523 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01284 Cma-Chr11:8583212 Cma16g00943 Cma-Chr16:7269003 2.90E-78 dispersed
Cma16g00943 Cma-Chr16:7269003 Cma16g00995 Cma-Chr16:7656778 6.92E-14 dispersed
Cma16g00943 Cma-Chr16:7269003 Cma06g00658 Cma-Chr6:3263898 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36581 PF03106 WRKY 3.10E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00943 - - bhj:120090463 952.199