Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00944 ATGCAGGAATCGTCAAGAAAGAAAGTTCCGAACCAATCTCATAGGTTCTACGAACAGCCACCGCAAGAACCTGGGTCGTGTTACTGGCCTCCTATGAACCATGAAGGTGGCTTGTACTCTGATGATGTATTTGAACAAAATCACTTACCATCTGAGGCTTTCAAACAGTACTGCAACCTCGAGTCATCCTCAGGAACTAGTGGTTACCCTCCTCAAAATTCTTCCTCGACTGCTAGCTTCACATCGAATGGAAGCCCTTCTTCGCACCAAGAGTGCCACTCGTACCCGTTAGACCCGTATTATTCTCCCGACAATAACTGTGGCTCACCTGTCAGTAGATCTTGTTTAACAGATGATGCTGCTGATGACTTAAGGCACAAAATCAGGGAATTGGAGACTGCCATGCTTGGACCGGATGCCGATGGGTTTGACATCTACTTGGTCGCTAATCCAGTCGATCCTGTATTGCCTGTGCAAGAAGCAGGGTGGAAAGATGTGGCTGAGATAATGACGAGAAAGGATTTGAAAGAGATGCTTTGTGCTTGTGCACGAGCAATAGGGGAAAACGATATGTTGACTGGTGAATGGTTGGTGTCGGAGCTACGTGGAATGGTCTCGGTTTCGGGTGAGCCAATCCAGCGTTTAGGAGCTTACTTGTTAGAGGCACTTATTGCAAGGACAGCCTCTTCAGGCAATTCTATCTACAAAGCCTTAAGATGTAAAGAGCCTATAGGTACTGAGATGCTCTCATACATGCACATTCTCTATGAAATTTGCCCTTATTTCAAGTTTGGATACCTTTCAGCAAATGGGGCAATTGCTGAAGCCATTAAAGGTGAAAATAGAGTTCACATAATTGATTTCCAGATAGCACAGGGAAATCAATGGATTACATTGATGCAAGCTCTTGCAAATCGACCTGGAGGACCCCCGAAGGTTACCATTACAGGCATAGATGATTCTGCTTCCACTTTTGCTCGAGGAGGAGGGCTCGAGATTGTCGGGAAAAGGTTGTCGCTTTTGGCAGAGTCGTTAATGGTACCCTTTGAGTTCCGTGGAATTGCAGGCTCTGCTTCTGAAATTCAACCCGAAGATCTTAAAGTTCAACCAGGTGAAGCCATTGCTGTGAGTTTTACCTTGGTGCTGCATCATATGCCCGACGAAAGCGTTGGCAGTCAGAATCACCGGGATCGAATCTTGCGGCTGGTCAAGAGCTTGTCTCCAAAAGTTGTGACAGTCGTCGAGCTCGAGTCGAACAACAATACAGCTCCCTTTTATTCCCGTTTCCTCCAGACATTAAAATATTACACAGCTATCTTCGAATCCATAGATGTTACCCTCCCAAGAGATCACAAGGAGCGAATCAATGTGGAGCAGCACTGTTTAGCTCGCGACATCGTAAACATAGTTGCATGTGAAGGAGCCGAAAGAGTCGAACGTCATGAACTTCTCGGAAAATGGAGATCACGGTTCCTCATGGCAGGGTTTAAGCCACACCCCTTGAGCCCATTTGTCAATGCTACCATTGAGGCACTGCTAAAGAACTACAGTGACAAGTACACGCTTGAAGAAAGGGATGGGGCTCTATATCTCGGCTGGTTGAATCAAAATTTGGTAACCTCTAGTGCTTGGATATGA 1638 46.09 MQESSRKKVPNQSHRFYEQPPQEPGSCYWPPMNHEGGLYSDDVFEQNHLPSEAFKQYCNLESSSGTSGYPPQNSSSTASFTSNGSPSSHQECHSYPLDPYYSPDNNCGSPVSRSCLTDDAADDLRHKIRELETAMLGPDADGFDIYLVANPVDPVLPVQEAGWKDVAEIMTRKDLKEMLCACARAIGENDMLTGEWLVSELRGMVSVSGEPIQRLGAYLLEALIARTASSGNSIYKALRCKEPIGTEMLSYMHILYEICPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKVTITGIDDSASTFARGGGLEIVGKRLSLLAESLMVPFEFRGIAGSASEIQPEDLKVQPGEAIAVSFTLVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVELESNNNTAPFYSRFLQTLKYYTAIFESIDVTLPRDHKERINVEQHCLARDIVNIVACEGAERVERHELLGKWRSRFLMAGFKPHPLSPFVNATIEALLKNYSDKYTLEERDGALYLGWLNQNLVTSSAWI 545
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 7274694 7276331 - CmaCh16G009440.1 Cma16g00944 311542
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00944 545 MobiDBLite consensus disorder prediction 62 95 - -
Cma16g00944 545 PANTHER GIBBERELLIN-RESPONSIVE PROTEIN, PUTATIVE-RELATED 17 544 - -
Cma16g00944 545 MobiDBLite consensus disorder prediction 1 32 - -
Cma16g00944 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Cma16g00944 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 544 IPR005202 -
Cma16g00944 545 MobiDBLite consensus disorder prediction 62 92 - -
Cma16g00944 545 Pfam GRAS domain family 176 544 IPR005202 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00217 Cma-Chr2:966346 Cma16g00944 Cma-Chr16:7274694 0 dispersed
Cma09g01087 Cma-Chr9:5848091 Cma16g00944 Cma-Chr16:7274694 2.52E-142 dispersed
Cma16g00944 Cma-Chr16:7274694 Cma20g00670 Cma-Chr20:3070596 0 dispersed
Cma16g00944 Cma-Chr16:7274694 Cma06g00659 Cma-Chr6:3268699 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36582 PF03514 GRAS 1.50E-128 CL0063 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00944 - - csv:101220072 991.49