Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00946 ATGGAGTTTTCGGAGTACAGAAGAATTGTATTCCATCGAATCAGTAAAATAGATCCAGAGAATGTTGAGGACATCATTTGTTTTATACTTCTTCATGATCATTATGATCAAGAAATGGCTCGCTTAGCACTAGCCCCTGACCATCATATCCAACAAGTGGTTCATCTAGTCAAGATTCAGCTGCATCTATTAGCTTTAAGATCGATGCCGGCCCCGTCCCCGCCCCCGTCCTCGTCCCCGGGAGCTTTTGTTCCTTTTTCCATTAGAGACAGTCACATGCCATTAGTATACCCTGATTCTATGTATGAACTACAAAATCCAGCTCAGTTCTTTTGTTTAGACGATTGTATCGAACCGTCGAACCGGGGTCTCTCGAGCTATGATTGTAGCTATGTTGAGAATGCTGCAATGGTTAACAAATTTAGTTCGAGGACTGCTCGACATTACTCAACCATGGTCGAGTATCAGCCGAGGACATGTCATTACTACAGCAAAGGAAATTGTAAGCATGGTAATAGTTGTAGGTATCTCCATAGCAACCAAATGCCTGGGAGCTTTTCTCAGATGTATAATGTCAATGATGATCATGTTTTTCGGCCCGGTTCACTCGAGCGATTGGAGTTTGAAATCGTTGAACTTCTTAGATCGAGACGAGGTAGTCCTATTTCAATTGCTTCACTGCCAATGATTTACTATGAAAAGTATGGTAAAGTTCTTCAAGCAGAAGGATACTTGACTGAGAGTCAGAGGCATGGTAAATCGGGTTTTAGCTTAACGAAACTCCTCACTCGTTTGAAAAGCAGCATCCAGGTGATCGACAGGCCTCATGGGCAACATTCTGTCATTTTAGCAGAAGACGCTTTGAAATTCATCGACCATCGGAAGGACAAGAACAACACGAGTCCGACCGTTAGCAGCGCACGACAGATATATATGACATTTCCAGCTGATAGCAGCTTCACTGAAGATGATGTTTCTGATTACTTCAGGCAAAATGCAAAATGCTTTATCCATTATGGACTAGTTGAAGATGTAAGAATCCCTTGTCAACAAAGAAGGATGTTCGGTTTCGTGACGTTTCACAGCGTCGAGACAGTGAAACTAATCTTGTCCGAGGACAGCGAGCATTTAATTTGCGGGGCTCGAGTTCTCGTGAAACCTTATAGGGAAAAGTCGAAGCTGTTGGAAAGGAAGAACCAAGATAGGATTGAACAACAGCAACAGCAAGCTTATTTTTCTTCACACTATAACAGCCTCGAACCCGAGCAGCTTCACTCGAATTATGATTCTGCCTCCACAATTCTGAGGCTAAGAATCGAAGAACAACAACAACAACACGCACTCGAAGTCGAACGGAGCTTTTCCGAGATGACGTTAATGCCGAAATCTGCTACGAATTGTTCGTACTTTAGCTATCAGATGAAAGAACTAAGACTTCCAGTTCCAGAAGAATTTCACTTCCCAAGAACAGAGAGTTTTGATCGTATGATGAATATTATGAAAAGTTTCTCCGGCCCGGGATCTGGCTCTAGTTCGGGGTGTAGCTCGATAGTCGATGAACAAAAACCACCTGGAAACGCGGCGGCTTGGAATCACCCTGAGCTGAACCTCGACAACAGCGAAGGATACAATCTACCAGACAGCCCATTTGAGTCTGGAACAGCAAACAACACATAG 1677 43.47 MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQLHLLALRSMPAPSPPPSSSPGAFVPFSIRDSHMPLVYPDSMYELQNPAQFFCLDDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNCKHGNSCRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLERKNQDRIEQQQQQAYFSSHYNSLEPEQLHSNYDSASTILRLRIEEQQQQHALEVERSFSEMTLMPKSATNCSYFSYQMKELRLPVPEEFHFPRTESFDRMMNIMKSFSGPGSGSSSGCSSIVDEQKPPGNAAAWNHPELNLDNSEGYNLPDSPFESGTANNT 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7293534 7297275 - CmaCh16G009460.1 Cma16g00946 311544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00946 558 Pfam OST-HTH/LOTUS domain 202 281 IPR025605 -
Cma16g00946 558 MobiDBLite consensus disorder prediction 504 558 - -
Cma16g00946 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 390 IPR000504 GO:0003723
Cma16g00946 558 MobiDBLite consensus disorder prediction 504 519 - -
Cma16g00946 558 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 179 IPR000571 GO:0046872
Cma16g00946 558 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 91 553 - -
Cma16g00946 558 SMART rrm1_1 309 386 IPR000504 GO:0003723
Cma16g00946 558 Gene3D - 150 234 - -
Cma16g00946 558 MobiDBLite consensus disorder prediction 537 558 - -
Cma16g00946 558 SMART c3hfinal6 154 180 IPR000571 GO:0046872
Cma16g00946 558 ProSiteProfiles Zinc finger C3H1-type profile. 154 181 IPR000571 GO:0046872
Cma16g00946 558 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 78 - -
Cma16g00946 558 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 91 553 - -
Cma16g00946 558 SUPERFAMILY CCCH zinc finger 156 179 IPR036855 GO:0046872
Cma16g00946 558 Gene3D - 315 394 IPR012677 -
Cma16g00946 558 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 78 - -
Cma16g00946 558 ProSiteProfiles OST-type HTH domain profile. 202 285 IPR025605 -
Cma16g00946 558 SUPERFAMILY RNA-binding domain, RBD 319 411 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00946 - - - csv:101203347 709.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00915 Cma-Chr10:4560960 Cma16g00946 Cma-Chr16:7293534 2.34E-35 dispersed
Cma11g00861 Cma-Chr11:4355026 Cma16g00946 Cma-Chr16:7293534 4.69E-40 dispersed
Cma16g00946 Cma-Chr16:7293534 Cma20g00678 Cma-Chr20:3114082 2.15E-92 dispersed
Cma16g00946 Cma-Chr16:7293534 Cma06g00661 Cma-Chr6:3278783 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36583 PF12872 OST-HTH 9.30E-11 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00946 Cma_Chr16 FPKM 2.632936 3.033007 29.566763 28.364046 4.374822 5.3759 4.184325 3.310192 3.549116 2.989805