Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00960 ATGACCCCAAGAAATCTCCTCGCCGTCGCCCTTTTCCTCCTCCTCTTCACTCCGCCAAGAACACAGAGTATCGGCTTCGATTTCAATTCTTTCAACATCAGAAACCTCACTCTCCTCGGCGATTCCCACTTCCGCGACGGCGTTATCGGCCTCACCAAAGAGCTCGGAGTCCCTTCCTCCAGCGCCGGCGCTGTAATTTACAATCAACCCATCGGATTATACGACGCCGATACCAACATTACTGCCTCTTTCTCCACAAGATTCTCTTTCTCCATTACTAATACTAACCCCACTTTCTCCGGCGACGGTCTTTCCTTTTTCCTCTCCCCTGATAATCGGACCCTCGGTAGTCCCGGTGGGTATTTAGGCCTCGTCAATTCCTCCCGTTTGGTTAACAAGTTTGTCGCGGTTGAATTCGACACTCGGCTTGATTCTGTCTTCAATGATCCTAATGATCACCATGTTGGCTTCGACATTGAAAGCTTGGTTTCAATCAAGACGGCCGATCCTGCTTCTCAAGAGCTCAATCTCAAGAGTGGGGAGTCCATTACGGCTTGGATTGAGTACAAGAATGAGGAGTGTAGGTTGAGGCTTTTCTTGAGTAATTCTAGTTTGAAGCCTTCTGAGGCGCTTCTCGACGTTAGTGTCGATCTTTCGAGCTATCTTAAGGAGGTTATGTATGTCGGGTTTTCGGGTTCGACTGAAGGGAGTACTGATCTTTATTTGATTGAGAGTTGGAGCTTTCATACTTCTGGGTTTGTTCCTGCTCGACGTCGATTTAAGCCTCATAATGTTTCTGATAGCTCTGTGATTGATTCTCCTAATATTTCTATATCTGATTCTGGAAATGGTCATCACAGTCGGCTCGGGCTGGGTCTCGGGATCGCCGGACCGGCCTTCTTTTGTGCCGTGATTGCTGTGTTTGGTTTCTTTTCACTTAGGAAATGGAGGAAGATTAGGACTCAAAAGAGCTTCAAGGCAGAGCTTTTGACAGGTCCTAGGGAGTTTTGTTACAGAGAACTAAAGAGAGCCACAAAAGGATTTCACTCCAGTAGGATCATTGGCAATGGGGCTTTTGGGACTGTCTATAAGGCTTTTTGCACCTCATCAGGAGGCATTTCGGCTGTTAAAAGATCGAAGCATTCCCACGAAGGAAAGACCGAGTTTCTGGCCGAGTTGACAATCATAGCTCGGTTGAGGCACAAAAATTTAGTTCAGCTCCAAGGTTGGTGCGTCGAGAAAGGTGAACTGCTTCTCGTTTACGACTTTATGCTGAATGGGAGCCTTGATAAGCTGCTCTACCAGGAATCTGTAGAAGCTAGCTTGTTAAACTGGTCTCACAGATACAACATTGCTGTTGGATTAGCCTCTGTGCTGACATATCTACATCAGGAATGTGAGCAGCAGGTGATTCATAGAGATATAAAGACTGGTAATGTACTGCTGGATGCGAACTTCAATGCCAGACTGGGCGATTTTGGATTGGCAAAGCTCATGGATCACGACAAGAGCCCGGTTTCAACTCTAACTGCAGGAACAATGGGATACCTCGCACCTGAGTATCTACAATACGGGAAAGCAACTGAGAAAACCGATGTCTTCAGCTACGGTGTGGTTATCCTTGAAGTGGCCTGTGGGAGGAGGCCGATCGAAAGAGAAGCAGGTACTCAAAAGATGGTCAATCTGGTAGATTGGGTTTGGGGATTACATTCTCAGGGAAAGATCATCGAAGCAGCCGATAAAAGGTTGAATGGCGAGTTCAAGGAAGAAGAAATGAGGAAACTGCTACTTGTTGGATTGAGCTGTGCAAACCCGGATAGCTCGGTGAGGCCTTCGATGAGGAAGGTCCTACAGATTCTCAACAATGAGACTGAGCCGGTGTTCGTGCCAAAACTGAAGCCTAGTCTTACCTTTTCTTGTGGCTTTTCACTGACCGTGGATGACATTATAGTAGAGGAAGGAGGAGGAGAGTGGGAATCTGCAAAGGCAACCACTATCCAAATAGACTGA 2010 46.97 MTPRNLLAVALFLLLFTPPRTQSIGFDFNSFNIRNLTLLGDSHFRDGVIGLTKELGVPSSSAGAVIYNQPIGLYDADTNITASFSTRFSFSITNTNPTFSGDGLSFFLSPDNRTLGSPGGYLGLVNSSRLVNKFVAVEFDTRLDSVFNDPNDHHVGFDIESLVSIKTADPASQELNLKSGESITAWIEYKNEECRLRLFLSNSSLKPSEALLDVSVDLSSYLKEVMYVGFSGSTEGSTDLYLIESWSFHTSGFVPARRRFKPHNVSDSSVIDSPNISISDSGNGHHSRLGLGLGIAGPAFFCAVIAVFGFFSLRKWRKIRTQKSFKAELLTGPREFCYRELKRATKGFHSSRIIGNGAFGTVYKAFCTSSGGISAVKRSKHSHEGKTEFLAELTIIARLRHKNLVQLQGWCVEKGELLLVYDFMLNGSLDKLLYQESVEASLLNWSHRYNIAVGLASVLTYLHQECEQQVIHRDIKTGNVLLDANFNARLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATEKTDVFSYGVVILEVACGRRPIEREAGTQKMVNLVDWVWGLHSQGKIIEAADKRLNGEFKEEEMRKLLLVGLSCANPDSSVRPSMRKVLQILNNETEPVFVPKLKPSLTFSCGFSLTVDDIIVEEGGGEWESAKATTIQID 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7435658 7437667 - CmaCh16G009600.1 Cma16g00960 311558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00960 669 Gene3D Phosphorylase Kinase; domain 1 311 423 - -
Cma16g00960 669 Pfam Protein kinase domain 348 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00960 669 Gene3D Transferase(Phosphotransferase) domain 1 424 637 - -
Cma16g00960 669 SMART serkin_6 348 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00960 669 ProSitePatterns Protein kinases ATP-binding region signature. 354 377 IPR017441 GO:0005524
Cma16g00960 669 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 21 640 - -
Cma16g00960 669 ProSitePatterns Legume lectins beta-chain signature. 135 141 IPR019825 -
Cma16g00960 669 CDD lectin_legume_LecRK_Arcelin_ConA 26 252 IPR001220 GO:0030246
Cma16g00960 669 Gene3D - 21 265 - -
Cma16g00960 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Cma16g00960 669 SUPERFAMILY Protein kinase-like (PK-like) 331 640 IPR011009 -
Cma16g00960 669 PANTHER - 21 640 - -
Cma16g00960 669 CDD STKc_IRAK 354 622 - -
Cma16g00960 669 Pfam Legume lectin domain 25 256 IPR001220 GO:0030246
Cma16g00960 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 256 IPR013320 -
Cma16g00960 669 ProSiteProfiles Protein kinase domain profile. 348 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02432 Cma-Chr4:16754469 Cma16g00960 Cma-Chr16:7435658 7.31E-145 dispersed
Cma06g00368 Cma-Chr6:1705099 Cma16g00960 Cma-Chr16:7435658 0 dispersed
Cma07g01040 Cma-Chr7:5422768 Cma16g00960 Cma-Chr16:7435658 2.42E-16 dispersed
Cma11g01293 Cma-Chr11:8634877 Cma16g00960 Cma-Chr16:7435658 3.82E-131 dispersed
Cma15g00615 Cma-Chr15:2910497 Cma16g00960 Cma-Chr16:7435658 8.87E-144 dispersed
Cma16g00960 Cma-Chr16:7435658 Cma04g00857 Cma-Chr4:4387318 1.44E-140 dispersed
Cma19g00488 Cma-Chr19:5816049 Cma16g00960 Cma-Chr16:7435658 9.55E-130 dispersed
Cma19g00825 Cma-Chr19:7857276 Cma16g00960 Cma-Chr16:7435658 1.66E-132 dispersed
Cma16g00960 Cma-Chr16:7435658 Cma14g00201 Cma-Chr14:864110 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69206 PF00069 Pkinase 3.30E-50 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00960 - - csv:101209797 1186.79