Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00962 ATGAATAGAGGATCAATCGACCTGGATTTTTATGAGCGTTGGTGGGTCTTGGAGTGTCTGTCAATTGCTCTGGTGCGTACTCGGGTCTACTTCATATTAGTTTTTAAATTTTCACGATGTTTGAATTCAGCCGCCGCCGCAGGAGGAGGAGGCGGCGGCGGTGGAGATGGGTTCCATAGCTACAGAAGGCAACACTCTAAGCCAACCTCTGGGTTGAACCACCACCTCTCAAGCGGTGCAACGGCCACCGGCAACTCTCCTGCTACCTGCCATGTGCCGGTCACTGGTGCCAACAATGAGCAGAGCCAACAATGCATGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCCGACGATGCCAAGGAGACCATCCAAGAATGTGTATCGGAGTACATCAGCTTCATCACTGGAGAGGCTAACGAGCGATGCCAACGGGAACAACGCAAGACAGTGACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTTGGCTTTGATGACTACATCGAGCCACTAACTATGTTCCTCAACCGATACCGTGAGTCGGAGAGTGATCGAGTTCGTACTGAGCCGATCTTGAGGCGCAATGTGGATTATGTGCCACAAGTGGGGATGATGCCACCGTACGGGCAAGCGTTTCCGCTAGGGCACACCTCGACAGGGATGTTCGATGCAATGGGCGGATACTATGGTGGAGGTAGGAGTGGCGGGACGAGCTCCGGAAACGGTAATCAGCTTTGA 792 52.4 MNRGSIDLDFYERWWVLECLSIALVRTRVYFILVFKFSRCLNSAAAAGGGGGGGGDGFHSYRRQHSKPTSGLNHHLSSGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGGRSGGTSSGNGNQL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7443314 7446892 + CmaCh16G009620.1 Cma16g00962 311560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00962 263 PRINTS CCAAT-binding transcription factor subunit A signature 179 197 - -
Cma16g00962 263 PRINTS CCAAT-binding transcription factor subunit A signature 160 178 - -
Cma16g00962 263 PRINTS CCAAT-binding transcription factor subunit A signature 141 159 - -
Cma16g00962 263 ProSitePatterns NF-YB/HAP3 subunit signature. 144 160 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma16g00962 263 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 94 231 - -
Cma16g00962 263 Gene3D Histone, subunit A 100 213 IPR009072 GO:0046982
Cma16g00962 263 MobiDBLite consensus disorder prediction 56 94 - -
Cma16g00962 263 SUPERFAMILY Histone-fold 110 203 IPR009072 GO:0046982
Cma16g00962 263 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 114 177 IPR003958 -
Cma16g00962 263 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 94 231 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cma16g00962 263 MobiDBLite consensus disorder prediction 64 94 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00962 Cma-Chr16:7443314 Cma02g00234 Cma-Chr2:1048906 2.44E-44 dispersed
Cma16g00962 Cma-Chr16:7443314 Cma06g00674 Cma-Chr6:3371316 5.42E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36584 PF00808 CBFD_NFYB_HMF 3.70E-25 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00962 K08065 - csv:116402762 305.834