Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00962 | ATGAATAGAGGATCAATCGACCTGGATTTTTATGAGCGTTGGTGGGTCTTGGAGTGTCTGTCAATTGCTCTGGTGCGTACTCGGGTCTACTTCATATTAGTTTTTAAATTTTCACGATGTTTGAATTCAGCCGCCGCCGCAGGAGGAGGAGGCGGCGGCGGTGGAGATGGGTTCCATAGCTACAGAAGGCAACACTCTAAGCCAACCTCTGGGTTGAACCACCACCTCTCAAGCGGTGCAACGGCCACCGGCAACTCTCCTGCTACCTGCCATGTGCCGGTCACTGGTGCCAACAATGAGCAGAGCCAACAATGCATGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCCGACGATGCCAAGGAGACCATCCAAGAATGTGTATCGGAGTACATCAGCTTCATCACTGGAGAGGCTAACGAGCGATGCCAACGGGAACAACGCAAGACAGTGACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTTGGCTTTGATGACTACATCGAGCCACTAACTATGTTCCTCAACCGATACCGTGAGTCGGAGAGTGATCGAGTTCGTACTGAGCCGATCTTGAGGCGCAATGTGGATTATGTGCCACAAGTGGGGATGATGCCACCGTACGGGCAAGCGTTTCCGCTAGGGCACACCTCGACAGGGATGTTCGATGCAATGGGCGGATACTATGGTGGAGGTAGGAGTGGCGGGACGAGCTCCGGAAACGGTAATCAGCTTTGA | 792 | 52.4 | MNRGSIDLDFYERWWVLECLSIALVRTRVYFILVFKFSRCLNSAAAAGGGGGGGGDGFHSYRRQHSKPTSGLNHHLSSGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGGRSGGTSSGNGNQL | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 7443314 | 7446892 | + | CmaCh16G009620.1 | Cma16g00962 | 311560 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00962 | 263 | PRINTS | CCAAT-binding transcription factor subunit A signature | 179 | 197 | - | - | |
Cma16g00962 | 263 | PRINTS | CCAAT-binding transcription factor subunit A signature | 160 | 178 | - | - | |
Cma16g00962 | 263 | PRINTS | CCAAT-binding transcription factor subunit A signature | 141 | 159 | - | - | |
Cma16g00962 | 263 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 144 | 160 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cma16g00962 | 263 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 | 94 | 231 | - | - | |
Cma16g00962 | 263 | Gene3D | Histone, subunit A | 100 | 213 | IPR009072 | GO:0046982 | |
Cma16g00962 | 263 | MobiDBLite | consensus disorder prediction | 56 | 94 | - | - | |
Cma16g00962 | 263 | SUPERFAMILY | Histone-fold | 110 | 203 | IPR009072 | GO:0046982 | |
Cma16g00962 | 263 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 114 | 177 | IPR003958 | - | |
Cma16g00962 | 263 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 94 | 231 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cma16g00962 | 263 | MobiDBLite | consensus disorder prediction | 64 | 94 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g00962 | Cma-Chr16:7443314 | Cma02g00234 | Cma-Chr2:1048906 | 2.44E-44 | dispersed | |
Cma16g00962 | Cma-Chr16:7443314 | Cma06g00674 | Cma-Chr6:3371316 | 5.42E-99 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36584 | PF00808 | CBFD_NFYB_HMF | 3.70E-25 | CL0012 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00962 | K08065 | - | csv:116402762 | 305.834 |