Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00963 ATGGCGACGCTTATCTTAAATCTCTCCCCCAAAACCCTCCGTTCTTCCTTCTTCCCCTCGCCATTTCCCTCTCTCTCAAACCCTAGAACTACGGCAACAACAACCCTCACTAACCAAATCAATTTCACCACTCTACGACGACGGCGACGACGACGCATCCTCACCGTCCGATCCTCCGGCGACCGCGACAACAACACCGCCGACGGCCCCGACCGCCTCATCTCCGCCATCTGCTACTTCTACCCGTTCTTCGACGGCGTCCAGTACGGCAAGTACGTTATCACTCAGTACGCTCCCTTTCAGGTTCTGATTCAGCCTTTGGTTCCCGCGATTCGAGTTTTCAAGAGCTTTCCATTCAACGGATTTCTGGTGTTTTTGACTCTATACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGATATGTTAGGTTCAATATTATGCAAGCCATTGTTCTTGATGTGCTTTTGATTTTCCCCGATCTTCTGGAGAGGAGCTTCAATCCGAGAGGGGGATTGGGGTTGGATTTGGTGATGAGCTTGGATAGCACTGTGTTTCTGTTTCTTTTGATTTGTTTGATTTATGGCTCATCTTCTTGCTTGTTGGGGCAGGTCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGGCAAGTTATGTGA 660 49.09 MATLILNLSPKTLRSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRRRRRILTVRSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7449484 7450143 - CmaCh16G009630.1 Cma16g00963 311561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00963 219 PANTHER PROTEIN TIC 20-V, CHLOROPLASTIC 31 219 - -
Cma16g00963 219 Pfam Chloroplast import apparatus Tic20-like 72 214 IPR005691 -
Cma16g00963 219 PANTHER PROTEIN TIC 20-II, CHLOROPLASTIC 31 219 IPR005691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00963 - - - cmos:111438760 394.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00839 Cma-Chr10:3931042 Cma16g00963 Cma-Chr16:7449484 7.38E-46 dispersed
Cma16g00963 Cma-Chr16:7449484 Cma11g00928 Cma-Chr11:4871229 4.30E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g667 . Blo03g01483 . Bda09g00438 . Bpe08g01091 . . Cmo16g01004 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1219 Cone15ag1240 . . . . . . . . . . Bma07g01246 . . . . . Cma16g00963 . Car16g00928 Cpe14g00789 . . . . . . . . . . . . . . . Lsi05g00497 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002643 1 2 2 2 2 2 3 2 2 1 2 2 3 2 2 2 2 4 1 2 1 2 1 2 2 2 2 2 2 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00963 Cma_Chr16 FPKM 3.083333 4.880763 8.050203 11.035674 69.347733 66.006607 66.613251 7.167243 8.168017 5.75583