Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00965 ATGGCGGACTCCGACAACGACTCCGGTGGAGGCTACCAGAAATCGCCGTCTCCGCGGGAGCACGACAGACTTCTCCCGATCGCCAACGTTGGCCGGATCATGAAGAAAGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAGATCGTCCAAGAGTGCGTCTCCGAGTTCATCAGCTTCGTCACTGGTGAGGCCTCCGACAAGTGCCACAACGAGAAGCGCAAGACTATCAACGGCGATGATTTACTTTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAGCGCTTTCGAGAAATTGAAGGCGAAAGGACCGCGCTAGCCTCGCGTGACTCCTCCTCCTCCGCCGCCGCCACCGCCACCGCCGCCGCCGGGGCTGCGAATAGTGCTTTCTTTGACGGCGGCGGGGAGTTCGGGGGTGGGATGGGGATGACGATGACGATGCCTCCGAATGTTTACGGGTCGAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG 549 59.38 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASRDSSSSAAATATAAAGAANSAFFDGGGEFGGGMGMTMTMPPNVYGSNGPRWDGPGFTTTGRPR 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7456100 7456648 - CmaCh16G009650.1 Cma16g00965 311563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00965 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cma16g00965 182 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cma16g00965 182 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cma16g00965 182 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cma16g00965 182 MobiDBLite consensus disorder prediction 163 182 - -
Cma16g00965 182 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma16g00965 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cma16g00965 182 Gene3D Histone, subunit A 11 140 IPR009072 GO:0046982
Cma16g00965 182 MobiDBLite consensus disorder prediction 1 23 - -
Cma16g00965 182 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 158 - -
Cma16g00965 182 SUPERFAMILY Histone-fold 22 125 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00678 Cma-Chr6:3385698 Cma16g00965 Cma-Chr16:7456100 1.03E-86 dispersed
Cma16g00965 Cma-Chr16:7456100 Cma14g00188 Cma-Chr14:792274 2.28E-49 dispersed
Cma16g00965 Cma-Chr16:7456100 Cma02g00234 Cma-Chr2:1048906 1.78E-61 transposed
Cma16g00965 Cma-Chr16:7456100 Cma20g00686 Cma-Chr20:3142972 2.03E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36585 PF00808 CBFD_NFYB_HMF 3.20E-27 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00965 K08065 - csv:101204640 286.96