Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00980 ATGAAACAGCAAGGGACCATATTGGGCATGGAACACACCCCTTATCTACAGTTGGAGGCAATTTCGTTCAAGGAGTACGCATTTTGGAATGGTTATGGCACTACAAAAGGGGTTCCCCTAAAGCCCATGTTGCCGCCTGTAGACAATGAAGCAGCTAAAGAAGCTATCTTTTACTCATACAATAGACATATCAATGGTTTTGCAGCGGTTCTTGATTACAAAGTTGCAGAAGATGTAGCAAAACATCCAAGTGTGGTATCAGTACATGAAAACAAAGGAAGAGAACTGCATACAACAAATTCATGGAGTTTTCTTGGAGTTGAGAATAATGGTGGACTTCCTCCCAACTCTCTTTGGAATCTTGCAAATTTTGGTGAATCTACAATCATTGGCAACCTTGACACAGGCATTTGGCCCGAATCAAAGAGCTTCAATGATGAAGGATATGGACCTATACCAAAAAGATGGAAGGGAAGCTGTGAAGGTGGCTCCAACTTTAATTGCAACAGGTATTTCAACAAAGGGTATGCATCCATCGTCGGGCCTCTCAACTCAAGCTACTTAACAGCAAGGGACGATCAAGGGCATGGAACACACACTTTATCCACGGCTGGAGGCCATTTTGTTTCAAGAGCAAACATATTTGGGAATGGTAATGGTACTGCAAAAGGGGGCTCCCCTAAAGCCCTTGTCGCCGCCTATAAAGTATGTTGGCCTCGTGTGAACATTGGTGGGTGCTTTGACTCTGACATTCTGGCTGGCTTCGAAGCTGCCATTAGCGATGGAGTTGACGTTCTGTCTATTTCACTCGGTGGAAGTCCTTTAGAATTTCATGATGATCCAATAGCTATAGCATCCTTCCATGCAGTGAAGAACGGCATCACTGTCGTTTGTTCTGCTGGAAACTCAGGACCGTCTCCAGGCACTGTTGCAAATGTCGCACCATGGTTGATAACCGTGGGAGCTAGCACAATTGACAGGCTTTTTACCACTTACTTGGCGCTCGGAGACAAGAGACACATTAAGGGTGAAAGTATTTCTAATAAAATATTGCCAGTGCAGAAGTTTTATCCATTAATACGTGCTTTAGATGCAAAAAACAACAATGTCTCTAATATCGAAGCTATATTATGTCTTGAAGGGTCTCTTGATCCTAAAAAGGTAGAAGGTAAAATTGTGGTTTGCCTTAGTGGGGACATTGCAAATGTGGACAAAGGTTATGTGGCTGCTCAAGCAGGTGCTGTCGGGATGATTCTTACTAATGACAAGGAAGATGGGGATAGACTTGAGGTTGAGGCACACTTACTTCCTACTTCCCATATAAACTACATTGACGCTTACATGACTCACGTGAGGACAGAATTAGGAGTCAAACCAGCACCAATTATGGCTAGATTTTCTTCGAGAGGCCCCAATATAATTGAGCCCTCAATACTCAAGCCTGATATAACTGCACCAGGTGTGAATATATTAGCAGCTTTTACGGAAGAAACGTCACCAACTGGTTCGTCTTTTGATAAACGGCGGGTTCCATTTAATATATTATCTGGCACTTCTATGTCATGCCCTCATATTTCTGGTATCGTTGGCCTTCTCAAAACCCTTTATCCAAAATGGAGTCCAGCGGTTATGAAATCTACAATCATGACTACAGCTAGAATCAAAGCCAATGACTTAAATTCAATACTAAGCTCAGGAAAGGAGAAAGCAAACTCATTTGCATATGGTGCAGGGCATGTCAATCCAAACAAAGCAGCAAATCCAGGCCTTGTTTACGACCTCTCCACCGAAGACTATTTGAACTTCTTATGTGCTCGAGGCTACAACAAAACACAAATGAAGCTATTTTCCAATGATACTTCATTTGTTTGTTCAAAGAAATTCAAAGTAGCAGATTTGAACTACCCATCAATCACAATAGATAATCTGGCATCAGAAGTAGTAAAGATCAAAAGAAGAGTGAAGAATGTGGGAAGTCCAGCCACGTATGTTGCTAACGTCAAGGCACCACCAAGAGTTTCGGTTTCAGTAGAGCCAAATACTTTGAAGTTCACTAGAACCGGTGAAGAGAAGAGCTTCACAGTTGTGTTGAAGAGGGTTCCAAATGATTATCATCGAGGGTCTGTGTTTGGGAGACTTGCATGGTCTAATGGGAAGCACCATGTTAGGAGTCCGATTTTGGTGGTATTAGGATGA 2196 42.49 MKQQGTILGMEHTPYLQLEAISFKEYAFWNGYGTTKGVPLKPMLPPVDNEAAKEAIFYSYNRHINGFAAVLDYKVAEDVAKHPSVVSVHENKGRELHTTNSWSFLGVENNGGLPPNSLWNLANFGESTIIGNLDTGIWPESKSFNDEGYGPIPKRWKGSCEGGSNFNCNRYFNKGYASIVGPLNSSYLTARDDQGHGTHTLSTAGGHFVSRANIFGNGNGTAKGGSPKALVAAYKVCWPRVNIGGCFDSDILAGFEAAISDGVDVLSISLGGSPLEFHDDPIAIASFHAVKNGITVVCSAGNSGPSPGTVANVAPWLITVGASTIDRLFTTYLALGDKRHIKGESISNKILPVQKFYPLIRALDAKNNNVSNIEAILCLEGSLDPKKVEGKIVVCLSGDIANVDKGYVAAQAGAVGMILTNDKEDGDRLEVEAHLLPTSHINYIDAYMTHVRTELGVKPAPIMARFSSRGPNIIEPSILKPDITAPGVNILAAFTEETSPTGSSFDKRRVPFNILSGTSMSCPHISGIVGLLKTLYPKWSPAVMKSTIMTTARIKANDLNSILSSGKEKANSFAYGAGHVNPNKAANPGLVYDLSTEDYLNFLCARGYNKTQMKLFSNDTSFVCSKKFKVADLNYPSITIDNLASEVVKIKRRVKNVGSPATYVANVKAPPRVSVSVEPNTLKFTRTGEEKSFTVVLKRVPNDYHRGSVFGRLAWSNGKHHVRSPILVVLG 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7560508 7570000 - CmaCh16G009800.1 Cma16g00980 311578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00980 731 Gene3D - 326 456 - -
Cma16g00980 731 CDD PA_subtilisin_like 335 447 - -
Cma16g00980 731 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 38 97 IPR037045 -
Cma16g00980 731 Gene3D Peptidase S8/S53 domain 128 599 IPR036852 GO:0004252|GO:0006508
Cma16g00980 731 Gene3D - 603 730 - -
Cma16g00980 731 ProSitePatterns Serine proteases, subtilase family, serine active site. 517 527 IPR023828 -
Cma16g00980 731 ProSiteProfiles Serine proteases, subtilase domain profile. 101 586 - -
Cma16g00980 731 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 48 731 IPR045051 -
Cma16g00980 731 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 48 731 - -
Cma16g00980 731 CDD Peptidases_S8_3 95 552 IPR034197 -
Cma16g00980 731 Pfam PA domain 378 445 IPR003137 -
Cma16g00980 731 SUPERFAMILY Subtilisin-like 96 590 IPR036852 GO:0004252|GO:0006508
Cma16g00980 731 Pfam Subtilase family 126 578 IPR000209 GO:0006508|GO:0008236
Cma16g00980 731 PRINTS Subtilisin serine protease family (S8) signature 125 144 IPR015500 -
Cma16g00980 731 PRINTS Subtilisin serine protease family (S8) signature 516 532 IPR015500 -
Cma16g00980 731 PRINTS Subtilisin serine protease family (S8) signature 192 205 IPR015500 -
Cma16g00980 731 SUPERFAMILY PA domain 385 435 IPR046450 -
Cma16g00980 731 Pfam Fibronectin type-III domain 632 728 IPR041469 -
Cma16g00980 731 Pfam Peptidase inhibitor I9 50 97 IPR010259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00980 Cma-Chr16:7560508 Cma16g00989 Cma-Chr16:7617953 0 dispersed
Cma16g00984 Cma-Chr16:7576425 Cma16g00980 Cma-Chr16:7560508 1.53E-28 dispersed
Cma16g00985 Cma-Chr16:7580323 Cma16g00980 Cma-Chr16:7560508 0 dispersed
Cma16g00990 Cma-Chr16:7626761 Cma16g00980 Cma-Chr16:7560508 1.18E-26 dispersed
Cma16g00976 Cma-Chr16:7523164 Cma16g00980 Cma-Chr16:7560508 0 proximal
Cma16g00980 Cma-Chr16:7560508 Cma16g00982 Cma-Chr16:7574882 4.12E-49 proximal
Cma16g00979 Cma-Chr16:7548381 Cma16g00980 Cma-Chr16:7560508 1.01E-53 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00980 - - csv:105434448 1038.1