Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00985 ATGAACATAGGCCATTTAGTCTTACATTGTTTACTTGGGATCACATTCGCACGGCTTGAATCCGTCATCAGCCGATCTCCAAGTCGCAACGGAATCTCATTACAGTTTGCTCGGGTCATTGTTAGGAAGTATAGCAATGAGATGGCCAAGGAAGCAATCTTCTACTCCTACAACAAATATATCAATGGCTTTGCTGCCGTTCTTGACCATAAAGTTATGCAAGATCTAGCAAGACATCCCGCTGTCGTATCGATTCATGAGAACAAGCTGAGAAAGCTGCACACAACAAATTCATGGGAATTTCTTGAGCTAGAGAATGGATATGAGGCTATTCCCTCGAGGTGGAGGGGAAGTTGCGAGGGTGGCTCTAATTTTCATTGCAACAAGAAGCTAATTGGAGCACGGTATTTCAATAAAGGTTATGTCGCCCTTGCGGGATCCCTTGATGTTAGCTTTGACACAGCAAGGGACCAAGAAGGGCATGGAACACACACTTTATCCACGGCTGGAGGCAGTTTTGTTTCGGGAGCTAACGTTTTTGGTTATGGTAATGGTACTGCAAAAGGGGGTTCGCCTAAAGCCCGTGTTGCTGCCTATAAAGTATGTTGGCTTACATTTCGTGGTGGTCAGTGTTCGGATGCAGACATCCTAGCCGCCATAGAAGCTGCTATTACTGATGGTGTTGATGTTCTCTCACTTTCACTCGGTCGAGGTTCCATGGAGTTTTTCGACGACGTAATAGCGATTGGAGCCTTCCATGCGGTTCAACAAGGGATGGTCGTCGTCTGCGCAGGTGGAAACTCAGGACCCGATCTACAGAGCGTAGAAAACGTGGCGCCTTGGCTTTTCACTGTGGCTGCTAGCACAATCAACAGACAATTTACTAGTTATGTGGCCCTTGGAAACGAGAAGAATATCTCGGGGTCTCTTGATCCGAGAAAGGTGAAAGGGAAGATTATAGTTTGCGTTAGAGGGGACGATGCAAGAGTGAACAAGGGTTTTGTGGCTGCTAAAGCAGGTGCTGTTGGAATGATTCTAGCCAACAACGAGGAATATGGGAATGATGTTGTAGCCGATGCACACATCCTTCCTGTCTCCCACATAAAGATGGGAATCAAACCTGCACCTGTTATGGCTTCATTCTCATCTAGAGGTCCCAGTTCAATTGAGGAGTCGATACTCAAGCCTGATATAACAGCACCGGGCATCAATATAATTGCAGCCTATTCAAAAGATGCATCACCAAGTGGTTCACCATTTGATAACCGTCGAATTCCATTTAATCTAGTATCTGGCACTTCCATGTCATGTCCGCATATTTCTGGTATTGTTGCCCTTCTCAAGACCATTTATCCAAAATGGAGTCCAGCAGCTATCAAATCTGCAATCATGACCACAGCTGAAACTAGAGCCAATGACTTGCATCCAATACTAGATTTCACCAAGCTTGTAGCCAACCCATTGGCGTACGGTGCGGGACATGTGCAACCCAACCGAGCAGCAAATCCTGGCCTTGTTTATGACCTTACCACCAATGACTATTTAAATTTTTTATGTGCTCGAGGCTACAATAAAGCACAACTCAGTAAATTCTCCAATACGTCATTCGTTTGTTCAAAGTCATTCAAACTAACAGATTTCAACTACCCATCAATCTCGATACCCAATATGAAATCAGGACCTGTGACAATCAAAAGAACAGTTAAGAATGTGGGAAGCCCAAGTACATATGTAGCTCGGGTGGAGGTACCCCCAGGAGTTTTAGTTTCAATTAAGCCAAGTACGTTGAAGTTTACTCGAACTGATGAAGAGAAGACTTTCGAAGTTGTATTCCAAAGTGTGGCAAACAACAAGCATCGAGGCTATGTATTTGGGTCTTTGAAATGGTTAGATGGTAAGCATCATGTAAGAAGCTCAATTGTAGTGAATTTGGGATGA 1938 44.43 MNIGHLVLHCLLGITFARLESVISRSPSRNGISLQFARVIVRKYSNEMAKEAIFYSYNKYINGFAAVLDHKVMQDLARHPAVVSIHENKLRKLHTTNSWEFLELENGYEAIPSRWRGSCEGGSNFHCNKKLIGARYFNKGYVALAGSLDVSFDTARDQEGHGTHTLSTAGGSFVSGANVFGYGNGTAKGGSPKARVAAYKVCWLTFRGGQCSDADILAAIEAAITDGVDVLSLSLGRGSMEFFDDVIAIGAFHAVQQGMVVVCAGGNSGPDLQSVENVAPWLFTVAASTINRQFTSYVALGNEKNISGSLDPRKVKGKIIVCVRGDDARVNKGFVAAKAGAVGMILANNEEYGNDVVADAHILPVSHIKMGIKPAPVMASFSSRGPSSIEESILKPDITAPGINIIAAYSKDASPSGSPFDNRRIPFNLVSGTSMSCPHISGIVALLKTIYPKWSPAAIKSAIMTTAETRANDLHPILDFTKLVANPLAYGAGHVQPNRAANPGLVYDLTTNDYLNFLCARGYNKAQLSKFSNTSFVCSKSFKLTDFNYPSISIPNMKSGPVTIKRTVKNVGSPSTYVARVEVPPGVLVSIKPSTLKFTRTDEEKTFEVVFQSVANNKHRGYVFGSLKWLDGKHHVRSSIVVNLG 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7580323 7584310 - CmaCh16G009850.1 Cma16g00985 311583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00985 645 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 94 IPR037045 -
Cma16g00985 645 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 370 645 IPR045051 -
Cma16g00985 645 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 105 IPR045051 -
Cma16g00985 645 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 105 307 IPR045051 -
Cma16g00985 645 CDD Peptidases_S8_3 92 467 IPR034197 -
Cma16g00985 645 Pfam PA domain 307 369 IPR003137 -
Cma16g00985 645 Pfam Fibronectin type-III domain 546 642 IPR041469 -
Cma16g00985 645 PRINTS Subtilisin serine protease family (S8) signature 431 447 IPR015500 -
Cma16g00985 645 PRINTS Subtilisin serine protease family (S8) signature 157 170 IPR015500 -
Cma16g00985 645 CDD PA_subtilisin_like 307 368 - -
Cma16g00985 645 Gene3D - 518 644 - -
Cma16g00985 645 Pfam Peptidase inhibitor I9 46 94 IPR010259 -
Cma16g00985 645 Pfam Subtilase family 152 472 IPR000209 GO:0006508|GO:0008236
Cma16g00985 645 ProSiteProfiles Serine proteases, subtilase domain profile. 98 501 - -
Cma16g00985 645 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 33 105 - -
Cma16g00985 645 Gene3D Peptidase S8/S53 domain 373 514 IPR036852 GO:0004252|GO:0006508
Cma16g00985 645 Gene3D Peptidase S8/S53 domain 105 290 IPR036852 GO:0004252|GO:0006508
Cma16g00985 645 Gene3D - 291 307 - -
Cma16g00985 645 Gene3D - 308 371 - -
Cma16g00985 645 SUPERFAMILY Subtilisin-like 123 505 IPR036852 GO:0004252|GO:0006508
Cma16g00985 645 ProSitePatterns Serine proteases, subtilase family, serine active site. 432 442 IPR023828 -
Cma16g00985 645 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 307 369 IPR045051 -
Cma16g00985 645 SUPERFAMILY PA domain 312 374 IPR046450 -
Cma16g00985 645 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 370 645 - -
Cma16g00985 645 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 307 369 - -
Cma16g00985 645 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 105 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00985 Cma-Chr16:7580323 Cma16g00980 Cma-Chr16:7560508 0 dispersed
Cma16g00983 Cma-Chr16:7575751 Cma16g00985 Cma-Chr16:7580323 1.23E-21 proximal
Cma16g00985 Cma-Chr16:7580323 Cma16g00987 Cma-Chr16:7597941 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00985 - - bhj:120090550 912.524