Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00988 ATGGAGGCCTTCAATCTTCCTCCTTTACTTCTCCCCTTCTTTCTTTTTGCTCTCTTACAAACATCTACCATTGCAGCCAAGAAGTCTTATATTGTTTACTTGGGATCACATTCACATGGCTTCAATCCTTCTGCTCTTGATCTCCAACTTGCAACACAAACTCACTATAATCTACTTGGATCCGTGTTAGGAAGCAATGAAGCAGCTAAAGAAGCAATCTTTTACTCATACAATAGAAATATCAATGGCTTTGCCGCTGTTCTTGATCAAAAAGTTGCAGAAGTTGTAGCAAAGCATCCTGATGTGATATCAGTATATGAAAACAAAGGACTAAAACTGCACACAACACGATCATGGAACTTTCTTGGAGTTGAGAATGATGGTGGAGTTCCTTCAAACTCACTTTGGAACCTTTCAAGTTTTGGTGAATCTACAATCATTGGCAACATTGATACAGGCGTTTGGCCAGAATCAAAGAGTTTTAGTGATGAAGGATATGGACCTATCCCAAAAAGATGGAAGGGAAGTTGTGAAGGTGGCTCCAACTTTCGTTGCAACAGATGTAAAATTGAAGATTTGAAATGCAGGAAGCTGATTGGAGCACGATATTTCAACAAAGGATATATATCCGTGGTGGAACCTAAACCTCTCAACTCAAGCTATGAAACAACAAGGGACGATGATGGGCATGGAACACACACCTTATCCACAGCTGGAGGCAATTTCGTTGATGGAGTAAGCTTTTTTGGGAATGGTAATGGCACTGCAAAAGGGGGTTCCCCTAAAGCCCGTGTTGCTGCCTATAAAGTATGTTGGCCTCCAGCGTTGTATGGTTCGTGTTTTATGGCTGATATTGTAGCTGGCTTTGAAGCTGCCATTAGTGACGGAGTTGATGTTCTATCGGTTTCACTCGGTGGACTTCCTATGGAATTTTCTGACGATCTAATGGCTGTAGTGTCCTTCCATGCCGTGAAGAATGGCATCACTGTTGTTTGTTCTGGTGGAAATTTTGGACCAGTTGAAAAAAGTGTCTCAAATATCGCACCATGGATGATAACTGTGGGAGCTAGCACAATTGACAGGCTTTTTACTACTTACGTGGTGTTGGGAAACAAGATGCGCTTAAAGGGTGAAAGTCTTTCTAATCAAATATTGCCAGCTAAGAAGTTCTATCCGCTTATCCGTTCTTTAGATGCAAAATTCAACAATACCCTTCCTAACGACGCCCAAACATGTGCAAAAGGGTCTCTCGATCCTAAAAAGGTCAAAGGAAAAATTGTAATCTGCGTTAATTTGGGCGACGCTATGGAGAAAAGTCATGTGGTTGCTCAAGCAGGTGCTGTTGGGATAATTCTTGTTAATTATGAGGATATTGGGGATGGACTTTTGCCAGCTGCACACTTAATTCCTGCGGCACATATAAGCTACACCGATAGAAAATCAATCGACCAATACATCCAGTCTACTAAAAGTCCAATGGCTTACATGACTCGTGTGAAGACTGAATTGGGAATCAAACCAGCACCAATTATGGCTTCATTCTCATCAAGAGGTCCCAGCCTAATTGAGCCCTTAATACTCAAGCCTGATATAACAGCACCAGGTGTGAATATACTAGCGGCTTTCTCTGATGAAGTATCACCAACGGGTTCACCTTTTGATAAACGTCGGGTTCAATATAATGTATTATCAGGCACTTCTATGTCATGCCCCCATATTTCTGGCATCGTTGGCCAACTCAAAACCCTTTATCCAAAATGGAGTCCAGCAGCTCTTAGATCTGCAATCATGACCACAGCTGAAACCAAAGCCAATGACTTAAATCCAATACTAAACCCAGAAAAGGAGAAAGTAGACCCCTTGGCATATGGTGCCGGCCATGTCCAACCAAACAAAGCAGCAGATCCTGGCCTTGTTTACGACCTCTCCACCCAAGACTATTTGAACTTCCTATGTGCCCGTGGCTACAATAAAACACTAATGAAACTATTCACTAATGATACTTCATTCGTTTGTTTAAAGTCATTCAAAGTAACAGATTTAAACTATCCATCAATCTCGATGAATTATCTGAAATCAGAGGCGGTAGAGGTCAAAAGAAGAGTAACAAATGTGGGAAGTCCAGGTACGTATGTTGCCCAAATCGAAGCACCGCCAGAAGTTTCGATTTCGGTAGACCCAAGTACTTTGAAGTTCACCAAAACTGGTGAAGAGAAGGATTTCAAAGTTGTGTTGAAGAAGGTGTCAAATAATCAAACTGATGGGGGTCGAGGCAGGGGTCGAGGCGCGGGTCACGGGTCACGGCCTGCAATCACAGGTTGCAAGCTGGGTTGCAATTTGGACCTCAGGAAGCTAATTGGAGTACGGTACTTCAATAAAGGTTACACCGCCCTTGCGGGATCTCTTGATGGCAGCTTTGACACGTGTTCGGATGCAGACATCCTAGCCGCCATAGAAGCTGCTATTACTGATGCTGTTGACGTTCTTTCACTTTCACTCGGTCGAAGTTCCATGGAGTTTTTCGATGATGTAACGGCGATTGAATCCTTCCATGCGGTTCAACAAGGGATAGTCGTCGTTTGCTCGAGTGGAAACTCAGGACCCGATCCACAGAGCGTAGAAAATGTGGCGCCTTGGCTTTTCACTGTGGCTGCTAGCACAATCACCGGACAATTTACTAGTTATGTGGCCCTTGGAAACAAGAAGCATATCACGGTGAAAGGGAAGATTATAGTTTGCGTTAGAGGAGGGGATAGTGCAAGAGTGGACAAGGGTTACGTGGCTGCTCAAGCAGGTGCTGTTGGGATGACTCTAGCCAATAGCGAGGAAGATGGGAATGAACTTATAGCCGATGCACACCTGCTTTCTGTCTCCCACATAAGCTATATCGATGGTGAAACAGTCTATGAATACATCAACTCCACTGTGTAA 2931 43.47 MEAFNLPPLLLPFFLFALLQTSTIAAKKSYIVYLGSHSHGFNPSALDLQLATQTHYNLLGSVLGSNEAAKEAIFYSYNRNINGFAAVLDQKVAEVVAKHPDVISVYENKGLKLHTTRSWNFLGVENDGGVPSNSLWNLSSFGESTIIGNIDTGVWPESKSFSDEGYGPIPKRWKGSCEGGSNFRCNRCKIEDLKCRKLIGARYFNKGYISVVEPKPLNSSYETTRDDDGHGTHTLSTAGGNFVDGVSFFGNGNGTAKGGSPKARVAAYKVCWPPALYGSCFMADIVAGFEAAISDGVDVLSVSLGGLPMEFSDDLMAVVSFHAVKNGITVVCSGGNFGPVEKSVSNIAPWMITVGASTIDRLFTTYVVLGNKMRLKGESLSNQILPAKKFYPLIRSLDAKFNNTLPNDAQTCAKGSLDPKKVKGKIVICVNLGDAMEKSHVVAQAGAVGIILVNYEDIGDGLLPAAHLIPAAHISYTDRKSIDQYIQSTKSPMAYMTRVKTELGIKPAPIMASFSSRGPSLIEPLILKPDITAPGVNILAAFSDEVSPTGSPFDKRRVQYNVLSGTSMSCPHISGIVGQLKTLYPKWSPAALRSAIMTTAETKANDLNPILNPEKEKVDPLAYGAGHVQPNKAADPGLVYDLSTQDYLNFLCARGYNKTLMKLFTNDTSFVCLKSFKVTDLNYPSISMNYLKSEAVEVKRRVTNVGSPGTYVAQIEAPPEVSISVDPSTLKFTKTGEEKDFKVVLKKVSNNQTDGGRGRGRGAGHGSRPAITGCKLGCNLDLRKLIGVRYFNKGYTALAGSLDGSFDTCSDADILAAIEAAITDAVDVLSLSLGRSSMEFFDDVTAIESFHAVQQGIVVVCSSGNSGPDPQSVENVAPWLFTVAASTITGQFTSYVALGNKKHITVKGKIIVCVRGGDSARVDKGYVAAQAGAVGMTLANSEEDGNELIADAHLLSVSHISYIDGETVYEYINSTV 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7599287 7608087 - CmaCh16G009880.1 Cma16g00988 311586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00988 976 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 28 750 IPR045051 -
Cma16g00988 976 Gene3D - 651 761 - -
Cma16g00988 976 SUPERFAMILY PA domain 895 970 IPR046450 -
Cma16g00988 976 ProSitePatterns Serine proteases, subtilase family, serine active site. 565 575 IPR023828 -
Cma16g00988 976 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 807 901 IPR045051 -
Cma16g00988 976 Pfam Fibronectin type-III domain 680 752 IPR041469 -
Cma16g00988 976 SUPERFAMILY Subtilisin-like 786 902 IPR036852 GO:0004252|GO:0006508
Cma16g00988 976 CDD Peptidases_S8_3 111 600 IPR034197 -
Cma16g00988 976 Pfam Peptidase inhibitor I9 29 114 IPR010259 -
Cma16g00988 976 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 28 750 - -
Cma16g00988 976 CDD PA_subtilisin_like 366 494 - -
Cma16g00988 976 PRINTS Subtilisin serine protease family (S8) signature 226 239 IPR015500 -
Cma16g00988 976 PRINTS Subtilisin serine protease family (S8) signature 564 580 IPR015500 -
Cma16g00988 976 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Cma16g00988 976 Pfam Subtilase family 808 897 IPR000209 GO:0006508|GO:0008236
Cma16g00988 976 CDD PA_subtilisin_like 905 975 - -
Cma16g00988 976 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 114 IPR037045 -
Cma16g00988 976 Pfam PA domain 412 480 IPR003137 -
Cma16g00988 976 Pfam PA domain 898 966 IPR003137 -
Cma16g00988 976 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 903 975 IPR045051 -
Cma16g00988 976 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 903 975 - -
Cma16g00988 976 SUPERFAMILY Subtilisin-like 113 638 IPR036852 GO:0004252|GO:0006508
Cma16g00988 976 Pfam Subtilase family 143 608 IPR000209 GO:0006508|GO:0008236
Cma16g00988 976 Gene3D Peptidase S8/S53 domain 807 888 IPR036852 GO:0004252|GO:0006508
Cma16g00988 976 ProSiteProfiles Serine proteases, subtilase domain profile. 685 976 - -
Cma16g00988 976 Gene3D - 360 503 - -
Cma16g00988 976 Gene3D - 905 975 - -
Cma16g00988 976 Gene3D - 889 904 - -
Cma16g00988 976 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 807 901 - -
Cma16g00988 976 ProSiteProfiles Serine proteases, subtilase domain profile. 118 634 - -
Cma16g00988 976 Gene3D Peptidase S8/S53 domain 145 647 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00982 Cma-Chr16:7574882 Cma16g00988 Cma-Chr16:7599287 1.12E-47 dispersed
Cma16g00988 Cma-Chr16:7599287 Cma16g01002 Cma-Chr16:7712432 1.92E-23 dispersed
Cma16g00986 Cma-Chr16:7591915 Cma16g00988 Cma-Chr16:7599287 1.98E-17 proximal
Cma16g00987 Cma-Chr16:7597941 Cma16g00988 Cma-Chr16:7599287 1.58E-121 tandem
Cma16g00988 Cma-Chr16:7599287 Cma16g00989 Cma-Chr16:7617953 3.91E-43 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00988 - - bhj:120090550 1038.48