Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00995 ATGGGGAGGACTGATGATAATGTTGCTATTATTGAGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTCTTCTCAGCAATGCAAATCCTAGAGGAGGATGTTGCTGGTTCTAGACCTACAATGGACATTACCAGCACTGATAAACCCGAAAAAATCTTTCTCGGGTCTCAAGAACACACGGTGTCTAAAAACATCATTGCAAGAGGCGGGATCCCTGGTGTAAACTCTGGCGATCGGTCGACGGAGTTCGGTACGGTATCGGAGCAGAAATTCCGTGGGGGACTTGTGGAAAGGATTGCAGCAAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAACATTAGATCAACAGAGGAAGTGAAGTCTCCTTACTTGACCATACCGCCTGGTTTGAGTCCAACTACATTGCTTGATTCTCCAGTTTTTCTTTCAAATTCATTGGCTCAGCAATCTCCCACAACGGGAAAGTTCCCGTTTGTAGCGAACGTTAGTTATCGTAGCTCGACGATGATGTTGGAGGCGAACAATAGAGGCAACGACAATCCATTCGATGATAACGGTTCAGCGTTTGCTTTCAGACCCAGTGTGGAATCAGGATCATCATTTTTTCATGGTGCAGCAAGCAAAGTAATTTCACTTCCACAATCTTGTCCAAGAATTGAGGTTCCGGGCCTACCCTCAGAAAATTCTTATCAACCCGAAAATAGAATCAATCATCATCCTCAAATGGGGCTCTCTACGTCGTGCACGGAGAGGGACGATGGGGGTAAGAACTTGTTGAATGATCAAAGACCCTTCGATTCTGTGTGTGGTGGTGAACATTCGTCACCGCTCGATGAACAACCGGATGAAGGGGAGCAACGTGGCACTGGGGATTCGATGGCCAGTGGTGGTTGTGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTATCCTCGGAGTTATTACAAGTGCACACATCCGAACTGTCAGGTCAAGAAGAAGGTCGAGCGATCTCATGAAGGCCATATAACAGAGATCATCTATAAAGGAACGCATAACCATGTAAAACCCTCACCGAATCGACGAGCATCGGATTCCCATATCAATATGCAACTAGACATCCCTGTACAAGCAGGCCAACAGAATGCTGAAGTTCCCCTGTGGGAAGATTCACAAAAAGGGACTCCTGATTGGATGCATAGCAACCTTGAGGTGAGTTCTTCAGCATCATTGGGTCCTGAATATGGCAATCATATTGAAACAGCTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGAGGAACACATGGAAGTATAACAATGGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCCTATGTAACGGAAATGAGTGGGGCTACTAGAGCTATCCGTGAGCCTAGAGTTGTTGTTCAGACTACCAGTGAAGTAGATATTCTCGATGATGGCTATCGTTGGCGTAAATACGGACAGAAGGTGGTGAAGGGAAATCCGAATCCTAGGAGTTACTACAAGTGCACGAATCCCGGCTGCACAGTGAGGAAGCATGTCGAGCGAGCGTCACATGACCTGAAGTCAGTGATAACCACATATGAAGGAAAGCACAATCACGATGTTCCTGCTGCTCGGAATAGCAGCCACATCAGTTCATGCACATCCAGTCCAGTAACGGGTCAAAACTCGACCGCTACTCATGCTCACAGGCCAGGGCCACCACAGCCTCAAAACAACATGCCAAGAGTCGGAAGGCCAGCCTTCGGCCTTGCTGGAAGACAACCGATGGGCACTGCCCATGCCCATGGCTTCGGTTTTGGTATGAACCAACCTGGACTGAGAAATCTAAACCTGACCATGACCATGGCATCAGCTGGTCAAGCCAAGCTTCCTGTTATACCAATGCATCCATACTTAGCACAAGCACACAATGTTCATGAAATGGGTTTCTTGTTGCCTAAAGGTGAGCCCAATCTAGAACCTACATCTGATCTTGGCTTGAACTTCTCCAATGGTTCAACAGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGGCCTGAGATGTGA 2127 46.97 MGRTDDNVAIIEDWVPPSPSPRTFFSAMQILEEDVAGSRPTMDITSTDKPEKIFLGSQEHTVSKNIIARGGIPGVNSGDRSTEFGTVSEQKFRGGLVERIAARAGFNAPRLNTENIRSTEEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFVANVSYRSSTMMLEANNRGNDNPFDDNGSAFAFRPSVESGSSFFHGAASKVISLPQSCPRIEVPGLPSENSYQPENRINHHPQMGLSTSCTERDDGGKNLLNDQRPFDSVCGGEHSSPLDEQPDEGEQRGTGDSMASGGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHVKPSPNRRASDSHINMQLDIPVQAGQQNAEVPLWEDSQKGTPDWMHSNLEVSSSASLGPEYGNHIETAEAIDASSTFSNDEDEDDRGTHGSITMGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSCTSSPVTGQNSTATHAHRPGPPQPQNNMPRVGRPAFGLAGRQPMGTAHAHGFGFGMNQPGLRNLNLTMTMASAGQAKLPVIPMHPYLAQAHNVHEMGFLLPKGEPNLEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7656778 7660177 + CmaCh16G009950.1 Cma16g00995 311593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00995 708 SUPERFAMILY WRKY DNA-binding domain 493 561 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00995 708 Gene3D WRKY domain 299 365 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00995 708 MobiDBLite consensus disorder prediction 225 312 - -
Cma16g00995 708 Pfam WRKY DNA -binding domain 306 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00995 708 Pfam WRKY DNA -binding domain 502 558 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00995 708 ProSiteProfiles WRKY domain profile. 306 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00995 708 Gene3D WRKY domain 488 554 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00995 708 MobiDBLite consensus disorder prediction 230 256 - -
Cma16g00995 708 ProSiteProfiles WRKY domain profile. 496 561 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00995 708 SMART WRKY_cls 501 560 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00995 708 SMART WRKY_cls 305 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00995 708 SUPERFAMILY WRKY DNA-binding domain 304 364 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00995 708 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 210 IPR044810 GO:0003700
Cma16g00995 708 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 291 657 IPR044810 GO:0003700
Cma16g00995 708 MobiDBLite consensus disorder prediction 433 469 - -
Cma16g00995 708 MobiDBLite consensus disorder prediction 558 599 - -
Cma16g00995 708 MobiDBLite consensus disorder prediction 563 592 - -
Cma16g00995 708 PANTHER BNAA03G10980D PROTEIN 291 657 - -
Cma16g00995 708 PANTHER BNAA03G10980D PROTEIN 79 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00658 Cma-Chr6:3263898 Cma16g00995 Cma-Chr16:7656778 1.97E-95 dispersed
Cma10g00833 Cma-Chr10:3895566 Cma16g00995 Cma-Chr16:7656778 2.70E-111 dispersed
Cma11g00939 Cma-Chr11:4927593 Cma16g00995 Cma-Chr16:7656778 2.46E-92 dispersed
Cma16g00943 Cma-Chr16:7269003 Cma16g00995 Cma-Chr16:7656778 6.92E-14 dispersed
Cma16g00995 Cma-Chr16:7656778 Cma18g01123 Cma-Chr18:9120796 3.44E-15 dispersed
Cma16g00995 Cma-Chr16:7656778 Cma06g00700 Cma-Chr6:3513185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36587 PF03106 WRKY 2.90E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00995 K18835 - csv:101207853 1111.29