Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00996 ATGGAGGATCACAATGAGGAAAACCATGATTTAGAATTGCAAGATGGCGATGAACTTCATCCAATGAGAACTAACAGTGGAAAACGCGGAGCGTTTCTGGATCTGTTTCATCATCTCAATCGAGGCGGCAGCTTTTCTGGTCGTCGTCTCAATTACAAGCGTCTTGAAACGGAGAATCATAGCGTTAATTTCAACCCTTCTTCTGTTAATATTGTCGGTAGAAATCGTACGGCTTCTTCTTCTTCTTCTTCATCTTCATCTTCTTCTTCCGATCGTCACAACAATTCGCATTCTCTTCAAACCCCAACTGTAATCGATGGCGAAATCGACGACAATATCGATGATTCTGCCCCTCCTGAATGGGCTTTGCTCCTTATTGCCTGTCTTCTTGGTCTCGCCACCGGTCTTTGCGTTGCAGCTTTTAACATTGGGGTACATGTAATCCATGAATGGGCTTGGGCTGGCACTCCAAATGAGGGTGCTGCTTGGCTTCGCTTACAGAGAATGGCTGATACATGGCATCGCATTCTCTTGATACCAGTAACTGGAGGTGTTATAGTGGGTATGATGCATGGTTTGCTTGAGATACTCAGCCAAATAAAACAGTCAAGTTCTTCCCAAAGGCAAGGATTCGATTTACTTTCTGGAATTTTTCCTACGGTTAAAGCCATTCAAGCAGCCATCACTTTAGGTACTGGCTGTTCATTGGGTCCTGAAGGGCCTAGTGTAGATATTGGGAAATCATGTGCCAATGGATTCTATCTTATGATGGAAAACAACAGTGAAAAGATAAAAATAGCATTTGTTGCAGCTGGTGCAGCAGCTGGAATTGCTTCCGGCTTCAATGCAGCTGTTGCTGGTAGCTTCTTTGCAATCGAAACTGTATTAAGGCCTCTACGTGCAGAAAATTCACCTCCTTTTACAACTGCGATGATCATATTGGCATCTGTTATTTCTTCTACAGTCTCGAATGTTTTACTTGGTGCACAGTCTGCTTTCACAGTACCTACTTATGATTTGAAATCTGCTGCTGAACTTCCATTGTACTTGATATTGGGAATGCTATGTGGCGTTGTGAGTGTAGCAGTTACACGTTTAGTTGCTTGGTTCGATAAATCATTTGAATTCATCAAGGAAAGGTTTGGTCTTCCTCCTGTTGTCTGTCCTGCTTTAGGCGGTTTGGGAGCTGGAATAATTGCTCTCAAGTACCCAGGAATACTTTATTGGGGTTTTACAAACGTTGAAGAAATCCTTCATACTGGTAACCGTCCTTCAGCTCCTGGGATTTGGTTATTAACTCAGATAGCAGCTGCAAAAGTCGTAGCTACTTCTCTGTGCAAAGGTTCCGGGCTCGTGGGTGGCCTTTATGCACCCAGTCTAATGATTGGTGCAGCTGTCGGTGCTGTATTTGGGGGCTCAGCTGTTGAACTTATTAATATTGCAATTCCTGGAAATGCAGCTGTTGCACAGCCTCAAGCATATGCACTCGTTGGAATGGCTGCTACGCTGGCCTCGGGGGCCGTAGGCTTGGCCATATGGGTTCCTTCCGTTACAAAACAGACCAAGGAAATTGAATCATCCAATAAGCGGGGTTTCGCTAGAGGTTATACGCCTCTTTCACCTTCTGAACATAAAGATGGGGCATCTTGGAGATATGATAATATTGACAATGGCTTGGAGCTCTCTGAGATAGCAAATCCATCTGACCATGAATCTACTTATGATGATAATCTTCTCGATGACCTAAAGGTTTCTCAAGCGATGTCGAAGAACTATCTGAAGGTTTCATTTTCCATATATTTGAAAGATGCATTAAAATATATGAAAGATAACCAGCAGAACTGTGCATTAGTGGTCGATGATGATGATTTCCTCGAAGGGATCTTGACATATGGTGACATTAAACGATATTTCTTCAAGAAATATGGTGATGCTTTGAAGGGTGATTCCCTCAGTGTGGATACCGGCCTTGTGTCCTCTATTTACACTCGAGGGATTAGGTACCGTGGGCGAGAACGAGGAATTCTAACATGCCACCCTGACACTGATCTCGTAACTGCCAAGGAACTAATGGAGGCTAAGGGTATAAAGCAGTTGCCTGTTGTTAAGCGTAGTAAAGAAAGGAAGAAAAGAATCGTAGCTGTTCTCCACTATGATTCAATCTTTAGCTGTCTCAGAGAGGTCTTGAATCAAAGGGAAACTGAGAAGGTTGTCCAGGAGAGTGTTGCAGATGGTCATTAA 2241 43.42 MEDHNEENHDLELQDGDELHPMRTNSGKRGAFLDLFHHLNRGGSFSGRRLNYKRLETENHSVNFNPSSVNIVGRNRTASSSSSSSSSSSSDRHNNSHSLQTPTVIDGEIDDNIDDSAPPEWALLLIACLLGLATGLCVAAFNIGVHVIHEWAWAGTPNEGAAWLRLQRMADTWHRILLIPVTGGVIVGMMHGLLEILSQIKQSSSSQRQGFDLLSGIFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYLMMENNSEKIKIAFVAAGAAAGIASGFNAAVAGSFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGAQSAFTVPTYDLKSAAELPLYLILGMLCGVVSVAVTRLVAWFDKSFEFIKERFGLPPVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGNRPSAPGIWLLTQIAAAKVVATSLCKGSGLVGGLYAPSLMIGAAVGAVFGGSAVELINIAIPGNAAVAQPQAYALVGMAATLASGAVGLAIWVPSVTKQTKEIESSNKRGFARGYTPLSPSEHKDGASWRYDNIDNGLELSEIANPSDHESTYDDNLLDDLKVSQAMSKNYLKVSFSIYLKDALKYMKDNQQNCALVVDDDDFLEGILTYGDIKRYFFKKYGDALKGDSLSVDTGLVSSIYTRGIRYRGRERGILTCHPDTDLVTAKELMEAKGIKQLPVVKRSKERKKRIVAVLHYDSIFSCLREVLNQRETEKVVQESVADGH 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7660170 7666538 - CmaCh16G009960.1 Cma16g00996 311594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00996 746 CDD CBS_pair_voltage-gated_CLC_euk_bac 588 721 - -
Cma16g00996 746 Gene3D Clc chloride channel 110 512 - -
Cma16g00996 746 SMART cbs_1 674 726 IPR000644 -
Cma16g00996 746 SMART cbs_1 591 639 IPR000644 -
Cma16g00996 746 MobiDBLite consensus disorder prediction 1 25 - -
Cma16g00996 746 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 14 505 - -
Cma16g00996 746 PRINTS Chloride channel signature 451 471 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00996 746 PRINTS Chloride channel signature 274 293 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00996 746 PRINTS Chloride channel signature 492 508 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00996 746 PRINTS Chloride channel signature 222 241 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00996 746 SUPERFAMILY CBS-domain pair 578 723 IPR046342 -
Cma16g00996 746 ProSiteProfiles CBS domain profile. 671 734 IPR000644 -
Cma16g00996 746 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 506 734 - -
Cma16g00996 746 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 14 505 - -
Cma16g00996 746 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 506 734 - -
Cma16g00996 746 MobiDBLite consensus disorder prediction 63 111 - -
Cma16g00996 746 Gene3D - 565 727 IPR046342 -
Cma16g00996 746 Pfam CBS domain 584 638 IPR000644 -
Cma16g00996 746 Pfam CBS domain 674 723 IPR000644 -
Cma16g00996 746 ProSiteProfiles CBS domain profile. 588 646 IPR000644 -
Cma16g00996 746 MobiDBLite consensus disorder prediction 1 24 - -
Cma16g00996 746 Pfam Voltage gated chloride channel 199 505 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00996 746 SUPERFAMILY Clc chloride channel 119 505 IPR014743 -
Cma16g00996 746 MobiDBLite consensus disorder prediction 63 105 - -
Cma16g00996 746 CDD Voltage_gated_ClC 134 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00996 - - - csv:101212254 1205.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00313 Cma-Chr2:1484404 Cma16g00996 Cma-Chr16:7660170 3.11E-109 dispersed
Cma16g00996 Cma-Chr16:7660170 Cma06g00702 Cma-Chr6:3517781 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00996 Cma_Chr16 FPKM 3.936922 3.984169 9.775343 11.059175 5.573224 4.144254 5.734357 11.292712 10.309622 11.759452