Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00997 ATGTTATCCATTGAAAACCCTCCACCAGATCCCTCATATCAGCCATTGAGTATCAACAATGATGAGAGGCCTACTCAAAACGCCGCCATTCTTGACCACTCCACCTTCCCTAACTTCTCCTTGAGAGATTATGTTTTTGGTTGTCGGAGCAAGGATATCGAAAACAACTGGCCGTTTTCCCTCAAGAATTTGCAGCTTTGTTTGAAACATGGTGTAAAGGATTTACTACCACCGTTTCAGTCTCCGAATCGTGTCCGAAACCAGCGGGGTGAAAGTTCAACATCAAGTGTTCTTCATGGAGAGTTCTCTGAGCCTAAAGAACCTGTAGAACTAGAGCAATCGGATGCTAAGTTCGACGAAAAGCTAGTAAGAACTTGCACGGAATCGAGTTCATGCAGATGTGAAGGAGAAAATGGTTTCTCTTCCACCATGACAAGCATCTCACAACCCCAAAAAGAATTGGTTTCCACAAGTGGACCATCTAGTTCATCTTTAAAAACCGATACTTTATCCGAAACCCCGGCCGAAGTGGAGCGTACTTGTTTTCCAGCATCTGAAAAGAACGAAAGTAAGATCAAAACCTCAAGTAAAAGATGCAAGATTATCAGAAAATCGACCAATCACGTTGACCAAACATCAACTGTAGATATTGCTGCGAGTCTTAGTACGGTATCGGAGTCGATGGCTTCGAAAATATGCCCTGTCTGCAAGACGTTCTCCTCTTCATCAAACACCACTTTAAATGCTCATATTGATCAGTGTCTTTCTATAGCATCAACTCCAAAGTGTACATCAGACTCCAAACTCACACGGTTTAGGATCAAGCCGAGGAAGACGAAATTGATGGTTGATATCTACGCTACAGCTCGTTCTTGCACGTTGGAAGAGCTTGACAGACGAAATGGTACCGCTTGGGCCACTTCGTCGGGCTTTCCTGCTGAGAATATCGAAAATTGTCAGATTAATGAAGGGAAAAAGCAGAAAGTGATGCCAGTTCATCCAGAGGACATTGATGATCATAGTGCAGGTGCAGTTTATATTGATGCCAATGGCACGAAACTTCGAATTTTGTCCAAGTTTAGTTCTTCGTCATCGTTGTCGATATCGCAAAATGAACTTGGTTCTAAGAAACTCAACGGAGTAACGGTAAGGAAGTTTCATTCAGCCAAAAAGAAGAAAGGTCATTCAACTAAGCATCACAAGTATCTTAAAGTAGCTGCTGAAGGTAGAAAAGTTCCCTCTCAACGGTGCATTTCTCAGGTTCAAGGACACACTGAACGGAATGGATGTAGTAGATTGGAGGTACATAAAATAACGAAGCAAGCGAAACCCCACGATTCGGGAACTTTACGACAATGGGCGTGCTCGAAACGAACCAGAGCAAGTGTGAGCACCAGAAAGGAAGGCTATCAACCCTCTACGTTTAAATGGCATGTTGATACTGATCCCTCGGTTTTAGCTGACTCTTTGTTTGACAGAAGTCAAGTTGAGCATTGTGTTTCGTCTCCTGAAAGCAGCGAGAGAACGGACAACATGGAGTATGAAGCCTATATTTCAGACAAGAAAGGGCGGTCTCCCGTGCGGAGGAGCCTGAGAAGTTCGTTTTCTGGTGAAATGGTTGATATTGGTTCTCCAACACAAATGAAATATCAAACTCCACCTGGTTTTAACAAGAAGTTGTCAAGTAATTACCATGAAAATGCAGTGAAAGTTAGAAATTTGAACTCTTCCCGACGAGACGAGTTCCATGTCAGTAGCCGGTCGTCTACTGGTTCTAAGCCGTCTCCTCGGTTTAATCGGTTTTCTACTTTTGATCACAGCCGTAGCTCATCAGATGGAAGTATTGAAAGTGATCAATCTGCAAAGGAAGAGGTTACCAAAGTAAGTGAATTGGAAAACAGAAGTAATAGAGAAGCAATGAGCAAAGCCATAGCTTTGAGTAGTTCGGACTCGGAACCTGAATACGGCGGATGTCACGAGTTGAAAAACATGGATTCTCATATTCGAATAGATGTCGAGTTTCAAGAAAACATCAAGGGACTTGAACTTGGTAGTAGACAGAACTCATTTCATGAAGATGTTAGTGTGGATTCTTCTTCAAAATTAGTTCCGAACGAGAGCTTCACGTGTTTTTGTAAGACGAACAATAATGTCAAGACCCGGTGTGGCACGCTACAATCTACTCAGAATTGTTCATGCACTTTCTATGGATCATCAGATGGAGCGAAAGGCGGTTTCGGTATTGGACAAGACATGTTTTTCACTGATGAAGACTGCAGTGCCATGATTGGACATGATGTTCAAGGAGAACTGGATTCCGAGGCCAAGCGAGGAATGTCGTCTTTCGAGGTCGATCCAATATCTATTCCAGGACCTCCAGGATCTTTCTTGCCGAGCCCCCCGAGGGATATGAGATCCTCAGAATACCGAGGAACGTCTTCGTTGAGCTATAGCTGGGTTCATTCCTGCCTCGATCAGCACGAGTTGATTGATGGGGATTCATCAGGTTCTCCTATTTCTGCAACATCAACTATCTCTAACACCACAGCATCTCGATCTTGTTTTAAGCATAACAATCCATCTCGAGTATCTTCCGATGTATTTCATGATAAGTTCGGGTCAGTATCTCCAAAAGCTCGTGCATTGCCTCATGTAAATGGTGACATGTTTAAAGTCAATAAGTTACCAGTTGAAACGGGAGCTCTTGGCGTCGTAAATAACGGCCAGCCTTGCTGTTGTCAAAGGGTCGGCATCAACGTAACTTATCCCGAACCACAACTGACGAGGCATCACGCGATGACTTCGGAAACCATGCCAGCCATGGACAGAAGACCGAACAGCTTTGATATTATGGCTGAAGGGCCTGGACAGACGACACCGGAGAGCATGGGGTTCCCAGTAAATAAGTCGCCTTTCAAGTCCTATCCGGGACCGAAGTTTTCGAGTCCTCGTGAGCCTGCTAGTCCAGTTACGTCTAATTCTGTACTGAGGTTAATGGGAAAGAACTTGATGGTGGTAAACAAAGATGAGGAAGATGTAGCTATGTCACTTAAGCAGCCACAACTTAGTCAGGTTCCAAGCTTTTCGGGCGGTTCCTCGCAACATGTTCGAAATCAAGCCTCCTCTGGTTCGTATCCTCATTGGCCACATCAAAATGCAGGTAACTTATTGGGGCAGAGTCTCGATGTAACGTCCTCGAGGGGCTTCGGGAGCCCTGTGAATCTGAATATGTCGTTACCACACGGTCAAGCACCTACCACATTGTTTCTTAAGCAGCACACAGCCTCCCAAGCCAGATTCATTGCCAATGATCCAAAACACCTTGTAAGTCCATTTTGTTATCAACCAAAGGATGCTTCAAATCTCAACAAACCAGCAACAATACACAGTTCTAGTTTTCAATCGACCCCGTCTCGAAAAGATCATGCCAGCCCTGTTAAATGGGATTGTAATTCCGAACCGCCATACGTCTGCAGGAGGGGAGTCTTTTAA 3492 44.3 MLSIENPPPDPSYQPLSINNDERPTQNAAILDHSTFPNFSLRDYVFGCRSKDIENNWPFSLKNLQLCLKHGVKDLLPPFQSPNRVRNQRGESSTSSVLHGEFSEPKEPVELEQSDAKFDEKLVRTCTESSSCRCEGENGFSSTMTSISQPQKELVSTSGPSSSSLKTDTLSETPAEVERTCFPASEKNESKIKTSSKRCKIIRKSTNHVDQTSTVDIAASLSTVSESMASKICPVCKTFSSSSNTTLNAHIDQCLSIASTPKCTSDSKLTRFRIKPRKTKLMVDIYATARSCTLEELDRRNGTAWATSSGFPAENIENCQINEGKKQKVMPVHPEDIDDHSAGAVYIDANGTKLRILSKFSSSSSLSISQNELGSKKLNGVTVRKFHSAKKKKGHSTKHHKYLKVAAEGRKVPSQRCISQVQGHTERNGCSRLEVHKITKQAKPHDSGTLRQWACSKRTRASVSTRKEGYQPSTFKWHVDTDPSVLADSLFDRSQVEHCVSSPESSERTDNMEYEAYISDKKGRSPVRRSLRSSFSGEMVDIGSPTQMKYQTPPGFNKKLSSNYHENAVKVRNLNSSRRDEFHVSSRSSTGSKPSPRFNRFSTFDHSRSSSDGSIESDQSAKEEVTKVSELENRSNREAMSKAIALSSSDSEPEYGGCHELKNMDSHIRIDVEFQENIKGLELGSRQNSFHEDVSVDSSSKLVPNESFTCFCKTNNNVKTRCGTLQSTQNCSCTFYGSSDGAKGGFGIGQDMFFTDEDCSAMIGHDVQGELDSEAKRGMSSFEVDPISIPGPPGSFLPSPPRDMRSSEYRGTSSLSYSWVHSCLDQHELIDGDSSGSPISATSTISNTTASRSCFKHNNPSRVSSDVFHDKFGSVSPKARALPHVNGDMFKVNKLPVETGALGVVNNGQPCCCQRVGINVTYPEPQLTRHHAMTSETMPAMDRRPNSFDIMAEGPGQTTPESMGFPVNKSPFKSYPGPKFSSPREPASPVTSNSVLRLMGKNLMVVNKDEEDVAMSLKQPQLSQVPSFSGGSSQHVRNQASSGSYPHWPHQNAGNLLGQSLDVTSSRGFGSPVNLNMSLPHGQAPTTLFLKQHTASQARFIANDPKHLVSPFCYQPKDASNLNKPATIHSSSFQSTPSRKDHASPVKWDCNSEPPYVCRRGVF 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7670971 7676712 + CmaCh16G009970.1 Cma16g00997 311595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00997 1163 MobiDBLite consensus disorder prediction 538 571 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 783 808 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 572 586 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 1124 1146 - -
Cma16g00997 1163 PANTHER HAPLESS PROTEIN 1 1161 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 1124 1141 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 81 100 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 143 176 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 143 171 - -
Cma16g00997 1163 PANTHER HAPLESS PROTEIN 1 1161 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 538 636 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 617 636 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 1 21 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 79 111 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 1023 1053 - -
Cma16g00997 1163 MobiDBLite consensus disorder prediction 587 616 - -
Cma16g00997 1163 Gene3D Classic Zinc Finger 232 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00997 - - - cmax:111500225 2284.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01660 Cma-Chr6:10265782 Cma16g00997 Cma-Chr16:7670971 4.03E-09 transposed
Cma16g00997 Cma-Chr16:7670971 Cma06g00704 Cma-Chr6:3529096 1.49E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g790 . Blo03g01495 . . . Bpe08g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1275 Cone15ag1301 . . . . . . . . . . . . . . . . Cma16g00997 . Car16g00954 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006752 0 2 1 1 1 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00997 Cma_Chr16 FPKM 14.335419 14.728343 17.037025 15.850589 8.40455 9.426699 8.610147 10.939735 10.420753 10.149743