Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00999 ATGGAGGCCTTCAATCTTCCTCCTTTGCTTCTCTCGTTCTTTCTTTTTGCTCTTTTGCAAACATCCACCCTTGCAGCCAAGAAGTCTTATATTGTTTATTTGGGATCACATTCGCATGGGTTGAATCCTTCTGCTGTTGATCTCCAACTTGCAACACAAACCCACTACACTCTACTTGAATCCGTGTTAGGAAGGAAGCTGATTGGAGCACGGTATTTCAACAAAGGTTATGCATCCAACGTGGGACCTCTCAACTCGAGCTATGAAACGGCAAGGGACGATGATGGGCATGGAACACACACCTTATCCACAGCTGGAGGCAATTTCGTTCAAAGAGTAAGCATTTTTGGGAATGGTTATGGCACGGCAAAAGGAGGTTCCCCTAAAGCTCGTGTTGCTGCCTATAGAGTATGTTGGCCTGAGGTGGCGAATGGTGGGTGTTTTATGGCCGATATTCTAGCTGGCTTTGAAGCTGCCATTAGCGATGGAGTTGACGTTCTATCGATTTCACTCGGTGGAGGTGCTATAGAATTTTCTGAAGATCTACTAGCTATAATGTCCTACCATACAGTGAAGAACGACATCACTGTTGTTTGTTCGGCTGGAAATTCAGGACCATTTGCAGGTACTGTCTCAAATGTCGCACCATGGATGATAACGGTGGGAGCTAGCACAGTTGACAGGCTTTTTACAAGTTATGTGGCGTTGGGAGACAAGAGGCACTTCAAGGGTAAAAGTCTTTCTAGTAAATTATTGCCAACTAAGAAACTCTATCCGTTGATCCGTGCTTTAGATGCAAAATCCAACAATGTCTCTGATAACTACGCCATACTATGTCGCAAAGGGTCTCTTGATCCTAAAAAGGTAAAAGGAAAAATTGTAGTTTGCCTTAGAGGGGACAATGCAAGAATCGAGAAAGGTTATGTGGTTGCTCAAGCAGGTGCTGTTGGGATGATTCTTGCTAATGACAAGGAGAATGGAGATGCATTCGAGGCTGATGCGCATTTACTTCCTGCTTCACATATAAGCTATACCGACGGTGAATCAGTCTACCAATACATCCAGTCTACTAAAACTCCAATGGCTTACATGACTCACATGACTGAGTTGGGAATCAAACCCGCACCAATTATGGCTTCATTCTCATCAAGAGGTCCCAACACAATTGAGCCCTCAATACTCAAGCCTGACATAATAGCACCAGGTGTAAATATAATAGCGGCTTTCTCTGAAGCAACATCCATAACTGGTTTACCTTATGATAAGCGTATGGTTCAATTCACTGAATTATCTGGCACTTCTATGTCATGCCCCCATATTTCTGGCATTGTTGGTCTTCTCAAAACTCTTTATCCAAAATGGAGTCCAGCGGCTATCAGGTCTGCAATCATGACCACAGCTGGAACGGAAGCCAATGACTTAAATCCAATACTAAGCTCAGAAAAGGAGAAAGCAAACCCATTGGCATATGGTGCAGGCCATGTCCAACCAAATAAAGCAGCAAATCCTGGCCTTGTTTACGATCTCTCCATCCAAGACTACTTGAACTTCTTATGTGCTCGTGGCTACAATAAAGCACAAATGAAACTATTCACTAATGATACTTCATTTGTTTGTTCAAAGTCATTCAAAGTAATAGACTTGAATTATCCATCAATCTCGATATATAATCTAAAATCAGAGGTAGTGAATATCAAAAGAAGAGTGAAGAATGTAGGAAGTCCAGGCACCTATGTTGCTAAAGTCGAGTCACCGCCGGGAGTTTCAGTTTTGGTAGCACCAAGTACTTTGAAGTTCACTAAAACGGGTGAAGAGAAGAATTTCAAAGTTGTGTTGAGGAGGGTGCAAAGTAATCAAACTGAAGAGCATGTGTTCGGAAAACTTGTGTGGTCTGATGGGAAACATCGTGTTAGTAGTCCAATTTTTGTGACATTAGAGATTTAG 1944 42.49 MEAFNLPPLLLSFFLFALLQTSTLAAKKSYIVYLGSHSHGLNPSAVDLQLATQTHYTLLESVLGRKLIGARYFNKGYASNVGPLNSSYETARDDDGHGTHTLSTAGGNFVQRVSIFGNGYGTAKGGSPKARVAAYRVCWPEVANGGCFMADILAGFEAAISDGVDVLSISLGGGAIEFSEDLLAIMSYHTVKNDITVVCSAGNSGPFAGTVSNVAPWMITVGASTVDRLFTSYVALGDKRHFKGKSLSSKLLPTKKLYPLIRALDAKSNNVSDNYAILCRKGSLDPKKVKGKIVVCLRGDNARIEKGYVVAQAGAVGMILANDKENGDAFEADAHLLPASHISYTDGESVYQYIQSTKTPMAYMTHMTELGIKPAPIMASFSSRGPNTIEPSILKPDIIAPGVNIIAAFSEATSITGLPYDKRMVQFTELSGTSMSCPHISGIVGLLKTLYPKWSPAAIRSAIMTTAGTEANDLNPILSSEKEKANPLAYGAGHVQPNKAANPGLVYDLSIQDYLNFLCARGYNKAQMKLFTNDTSFVCSKSFKVIDLNYPSISIYNLKSEVVNIKRRVKNVGSPGTYVAKVESPPGVSVLVAPSTLKFTKTGEEKNFKVVLRRVQSNQTEEHVFGKLVWSDGKHRVSSPIFVTLEI 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7698565 7703232 + CmaCh16G009990.1 Cma16g00999 311597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00999 647 SUPERFAMILY PA domain 286 360 IPR046450 -
Cma16g00999 647 Pfam Fibronectin type-III domain 547 643 IPR041469 -
Cma16g00999 647 Pfam PA domain 275 349 IPR003137 -
Cma16g00999 647 SUPERFAMILY Subtilisin-like 64 505 IPR036852 GO:0004252|GO:0006508
Cma16g00999 647 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 65 645 IPR045051 -
Cma16g00999 647 PRINTS Subtilisin serine protease family (S8) signature 431 447 IPR015500 -
Cma16g00999 647 PRINTS Subtilisin serine protease family (S8) signature 93 106 IPR015500 -
Cma16g00999 647 Pfam Subtilase family 70 493 IPR000209 GO:0006508|GO:0008236
Cma16g00999 647 Gene3D - 227 371 - -
Cma16g00999 647 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 65 645 - -
Cma16g00999 647 Gene3D - 518 645 - -
Cma16g00999 647 CDD PA_subtilisin_like 233 362 - -
Cma16g00999 647 ProSitePatterns Serine proteases, subtilase family, serine active site. 432 442 IPR023828 -
Cma16g00999 647 Gene3D Peptidase S8/S53 domain 63 514 IPR036852 GO:0004252|GO:0006508
Cma16g00999 647 ProSiteProfiles Serine proteases, subtilase domain profile. 1 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00979 Cma-Chr16:7548381 Cma16g00999 Cma-Chr16:7698565 5.97E-59 dispersed
Cma16g00983 Cma-Chr16:7575751 Cma16g00999 Cma-Chr16:7698565 1.31E-28 dispersed
Cma16g00999 Cma-Chr16:7698565 Cma16g01002 Cma-Chr16:7712432 4.38E-12 dispersed
Cma16g01001 Cma-Chr16:7711593 Cma16g00999 Cma-Chr16:7698565 2.40E-98 dispersed
Cma16g00999 Cma-Chr16:7698565 Cma16g01000 Cma-Chr16:7709307 7.30E-120 tandem
Cma13g00335 Cma-Chr13:3874425 Cma16g00999 Cma-Chr16:7698565 2.26E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00999 - - csv:105434448 834.713