Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g01002 | ATGTATAATCTAAAATCAGAGGTAGTGAAGATTAAAAGAAGAGTGAAGAATGTAGGAAGTCCAGGCACCTATGTTGCTAAAGTCGAGGCACCACCAGGAGTTTTGGTTTCGGTAGACCCAAGTACTTTGAAGTTCACTAAAACGGGTGAAGAGAAGGATTTTCAAGTTGTGTTGAGGAGGGTTCAAAGTAATCAAACTGAAGAAAAGCATGTGTTCGAAAAACTTGTGTGGCCTGATGGAAAACATCGTTCTTATATTGTTTACTTGGGATCACATTCACATGGGTTGAATCCTTCCGCAATTGATCTTCAACGTGCAACACAAACCCACTACAATCTACTTGGATCCATGTTAGGAAGCAACGAAGCAGCTAAGGAAGCAATCTTTTACTCATACAATAGACATATCAATGCCTTTGCAGCTGTTCTTGATCAGAAAGTTGCAGAAGATATAGCAATACATGAGAACAAAAAACTAAAACTGCACACTACACGATCATGGAACTTTCTTGGAGTTGAGAATGATGGTGGAATTCCTTTAGACTCACTTTGGAATCTTTCAAGATTTGGTGAATCTACAATCATTGGCAACATTGACTCTGGTGTTTGGCCTGAATCAAAGAGTTTTAGTGACGAAGGATATGGACCTATCCCAACAAGATGGAAGGGAAGTTGTGAAGGTGGCACCCACTTTAGTTGCAATAGGAAGCTGATTGGAGTACGATATTTCAACAAAGGTTTTGCATCCGACGTGGGACCTCTCAACTCAAGCTATGAAACAGCAAGGGACGTTGATGGGCATGGAACACACACCTTATCCACGGCTGGAGGCAATTTCGTTAAAGGAGTAAGCATTTTAGGGAATAGTTATGGCACTGCAAAAGGGGGTTCCCCTAAAGCCCTTGTTGCTGCCTATAAAGTATGTTGGTCTACAGATAGAGGTGATGGGTGTTTTATGGCCGATATTCTAGCTAGCTTTGAAGCTGCCATTAGTGATGGAGTTGATGTTCTATCGGTTTCACTCGGTGGAGGTATTCAAGAATTTTCCGACGATCTTATAGCTATAGGGTCCTTCCATGCAGTGAAGAACGGCATCACTGTTGTTTGTTCAGCTGGAAATTCAGGACCAAGTGAAGATACTGTCTTAAATGTCGCACCATGGATGATAACTGTGGGAGCTAGCACAGTTGACAGGCTTTTTACAAGTTACGTGGGTGAAAGTCTTTCTAGTAAATTATTGCCACCTAAGAAGTTCTATCCGTTGATCCGTGCTTTAGATGCAAAATCCAACAACACCTCTAATCACGAAGCCATACTATGTCGTCAAGGGTCTCTTAATCCTGAAAAGGTAAGAGGAAAAATTGTAGTTTGCCTTAGAGGGGAAAATTCAAGAGGGGAGAAAGGTTACGTGGTTGCTCAAGCAGGTGGTGTTGGGATGATTCTCGCTAATGACAAAGAAAGTGGGGATGAACTTTCGGCTAGTCCTCACTTTCTTCCTGCTTCACATATAAGCTATACCGATGCTTACATGACTTCCGTGACTGAGTTGGGAATCAAACCAGCACCAATTATGGCTTCATTCTCTTCGAGAGGTCCCAACATAGTTGAGCCCTCAATACTCAAGCCTGATATAACAGCACCAGGGGTGAATATAATAGCGGCTTTCTCTGAAGCAACATCCATATCTGGTTTACCTTATGATAAGCGTCAAGCTCAATTTATTACATTATCTGGCACTTCCATGTCATGCCCCCATATTTCTGGCATTGTCGGCCTTCTCAAAACGCTTTATCCAAAATGGAGTCCAGCAGCTATCAGATCTGCAATCATGACGACAGCCGAAACCGAAGCCAATGACTTAAATCCAATACTAACCTCAGAAAAGGAGAAAGCAAACCCATTGGCATATGGTGCAGGTCATGTCCAACCAAACAAAGCATCAAATCCTGGCCTTGTTTACGACCTCACCACCCAAGACTACTTGAACTTCCTATGTGCCCGTGGCTACAATAAAACACTATTGAAACTATTCACTAATGATACTTCATTTGTTTGTTCAAAGTCATTCAAAGTAACAGATTTAAACTACCCATCAATCTCAATGAATAATCTGAAATCAGAGGCAGTAGAGATCAAAAGAAGAGTAAAAAATGTGGGAAGTCCAGGCATGTATGTTGCTCAAGTCGAGGCACCACCAGGAGTTTCTGTTTCGGTAGACCCGAGTACTTTGAAGTTCACTAAAACTGATGAAGAGAAGGATTTCAAAGTTGTGCTAAGGAGGGTGCCAAATAATCAAACTGAACAGAATGTGTTCGGAAAACTTAAATAA | 2328 | 41.67 | MYNLKSEVVKIKRRVKNVGSPGTYVAKVEAPPGVLVSVDPSTLKFTKTGEEKDFQVVLRRVQSNQTEEKHVFEKLVWPDGKHRSYIVYLGSHSHGLNPSAIDLQRATQTHYNLLGSMLGSNEAAKEAIFYSYNRHINAFAAVLDQKVAEDIAIHENKKLKLHTTRSWNFLGVENDGGIPLDSLWNLSRFGESTIIGNIDSGVWPESKSFSDEGYGPIPTRWKGSCEGGTHFSCNRKLIGVRYFNKGFASDVGPLNSSYETARDVDGHGTHTLSTAGGNFVKGVSILGNSYGTAKGGSPKALVAAYKVCWSTDRGDGCFMADILASFEAAISDGVDVLSVSLGGGIQEFSDDLIAIGSFHAVKNGITVVCSAGNSGPSEDTVLNVAPWMITVGASTVDRLFTSYVGESLSSKLLPPKKFYPLIRALDAKSNNTSNHEAILCRQGSLNPEKVRGKIVVCLRGENSRGEKGYVVAQAGGVGMILANDKESGDELSASPHFLPASHISYTDAYMTSVTELGIKPAPIMASFSSRGPNIVEPSILKPDITAPGVNIIAAFSEATSISGLPYDKRQAQFITLSGTSMSCPHISGIVGLLKTLYPKWSPAAIRSAIMTTAETEANDLNPILTSEKEKANPLAYGAGHVQPNKASNPGLVYDLTTQDYLNFLCARGYNKTLLKLFTNDTSFVCSKSFKVTDLNYPSISMNNLKSEAVEIKRRVKNVGSPGMYVAQVEAPPGVSVSVDPSTLKFTKTDEEKDFKVVLRRVPNNQTEQNVFGKLK | 775 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 7712432 | 7722578 | + | CmaCh16G010020.1 | Cma16g01002 | 311600 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g01002 | 775 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 166 | 647 | - | - | |
Cma16g01002 | 775 | CDD | PA_subtilisin_like | 401 | 509 | - | - | |
Cma16g01002 | 775 | SUPERFAMILY | Subtilisin-like | 161 | 651 | IPR036852 | GO:0004252|GO:0006508 | |
Cma16g01002 | 775 | Gene3D | Peptidase S8/S53 domain | 193 | 660 | IPR036852 | GO:0004252|GO:0006508 | |
Cma16g01002 | 775 | Pfam | Fibronectin type-III domain | 693 | 774 | IPR041469 | - | |
Cma16g01002 | 775 | Pfam | Fibronectin type-III domain | 5 | 83 | IPR041469 | - | |
Cma16g01002 | 775 | CDD | Peptidases_S8_3 | 159 | 613 | IPR034197 | - | |
Cma16g01002 | 775 | Gene3D | - | 1 | 89 | - | - | |
Cma16g01002 | 775 | PRINTS | Subtilisin serine protease family (S8) signature | 577 | 593 | IPR015500 | - | |
Cma16g01002 | 775 | PRINTS | Subtilisin serine protease family (S8) signature | 190 | 209 | IPR015500 | - | |
Cma16g01002 | 775 | PRINTS | Subtilisin serine protease family (S8) signature | 263 | 276 | IPR015500 | - | |
Cma16g01002 | 775 | Pfam | Peptidase inhibitor I9 | 84 | 154 | IPR010259 | - | |
Cma16g01002 | 775 | PANTHER | SUBTILISIN-LIKE PROTEASE SBT5.4 | 83 | 773 | - | - | |
Cma16g01002 | 775 | Pfam | Subtilase family | 191 | 639 | IPR000209 | GO:0006508|GO:0008236 | |
Cma16g01002 | 775 | Pfam | PA domain | 439 | 508 | IPR003137 | - | |
Cma16g01002 | 775 | Gene3D | - | 664 | 775 | - | - | |
Cma16g01002 | 775 | SUPERFAMILY | PA domain | 432 | 515 | IPR046450 | - | |
Cma16g01002 | 775 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 578 | 588 | IPR023828 | - | |
Cma16g01002 | 775 | PANTHER | SUBTILISIN-LIKE PROTEASE SBT5.4 | 3 | 81 | - | - | |
Cma16g01002 | 775 | Gene3D | - | 397 | 517 | - | - | |
Cma16g01002 | 775 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 3 | 81 | IPR045051 | - | |
Cma16g01002 | 775 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 83 | 773 | IPR045051 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g00988 | Cma-Chr16:7599287 | Cma16g01002 | Cma-Chr16:7712432 | 1.92E-23 | dispersed | |
Cma16g00989 | Cma-Chr16:7617953 | Cma16g01002 | Cma-Chr16:7712432 | 4.22E-32 | dispersed | |
Cma16g00999 | Cma-Chr16:7698565 | Cma16g01002 | Cma-Chr16:7712432 | 4.38E-12 | dispersed | |
Cma16g01000 | Cma-Chr16:7709307 | Cma16g01002 | Cma-Chr16:7712432 | 1.79E-103 | dispersed | |
Cma16g01002 | Cma-Chr16:7712432 | Cma06g00693 | Cma-Chr6:3478009 | 2.39E-14 | dispersed | |
Cma16g01001 | Cma-Chr16:7711593 | Cma16g01002 | Cma-Chr16:7712432 | 6.03E-92 | tandem | |
Cma13g00339 | Cma-Chr13:3920324 | Cma16g01002 | Cma-Chr16:7712432 | 6.78E-134 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g01002 | - | - | bhj:120090550 | 987.252 |