Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01002 ATGTATAATCTAAAATCAGAGGTAGTGAAGATTAAAAGAAGAGTGAAGAATGTAGGAAGTCCAGGCACCTATGTTGCTAAAGTCGAGGCACCACCAGGAGTTTTGGTTTCGGTAGACCCAAGTACTTTGAAGTTCACTAAAACGGGTGAAGAGAAGGATTTTCAAGTTGTGTTGAGGAGGGTTCAAAGTAATCAAACTGAAGAAAAGCATGTGTTCGAAAAACTTGTGTGGCCTGATGGAAAACATCGTTCTTATATTGTTTACTTGGGATCACATTCACATGGGTTGAATCCTTCCGCAATTGATCTTCAACGTGCAACACAAACCCACTACAATCTACTTGGATCCATGTTAGGAAGCAACGAAGCAGCTAAGGAAGCAATCTTTTACTCATACAATAGACATATCAATGCCTTTGCAGCTGTTCTTGATCAGAAAGTTGCAGAAGATATAGCAATACATGAGAACAAAAAACTAAAACTGCACACTACACGATCATGGAACTTTCTTGGAGTTGAGAATGATGGTGGAATTCCTTTAGACTCACTTTGGAATCTTTCAAGATTTGGTGAATCTACAATCATTGGCAACATTGACTCTGGTGTTTGGCCTGAATCAAAGAGTTTTAGTGACGAAGGATATGGACCTATCCCAACAAGATGGAAGGGAAGTTGTGAAGGTGGCACCCACTTTAGTTGCAATAGGAAGCTGATTGGAGTACGATATTTCAACAAAGGTTTTGCATCCGACGTGGGACCTCTCAACTCAAGCTATGAAACAGCAAGGGACGTTGATGGGCATGGAACACACACCTTATCCACGGCTGGAGGCAATTTCGTTAAAGGAGTAAGCATTTTAGGGAATAGTTATGGCACTGCAAAAGGGGGTTCCCCTAAAGCCCTTGTTGCTGCCTATAAAGTATGTTGGTCTACAGATAGAGGTGATGGGTGTTTTATGGCCGATATTCTAGCTAGCTTTGAAGCTGCCATTAGTGATGGAGTTGATGTTCTATCGGTTTCACTCGGTGGAGGTATTCAAGAATTTTCCGACGATCTTATAGCTATAGGGTCCTTCCATGCAGTGAAGAACGGCATCACTGTTGTTTGTTCAGCTGGAAATTCAGGACCAAGTGAAGATACTGTCTTAAATGTCGCACCATGGATGATAACTGTGGGAGCTAGCACAGTTGACAGGCTTTTTACAAGTTACGTGGGTGAAAGTCTTTCTAGTAAATTATTGCCACCTAAGAAGTTCTATCCGTTGATCCGTGCTTTAGATGCAAAATCCAACAACACCTCTAATCACGAAGCCATACTATGTCGTCAAGGGTCTCTTAATCCTGAAAAGGTAAGAGGAAAAATTGTAGTTTGCCTTAGAGGGGAAAATTCAAGAGGGGAGAAAGGTTACGTGGTTGCTCAAGCAGGTGGTGTTGGGATGATTCTCGCTAATGACAAAGAAAGTGGGGATGAACTTTCGGCTAGTCCTCACTTTCTTCCTGCTTCACATATAAGCTATACCGATGCTTACATGACTTCCGTGACTGAGTTGGGAATCAAACCAGCACCAATTATGGCTTCATTCTCTTCGAGAGGTCCCAACATAGTTGAGCCCTCAATACTCAAGCCTGATATAACAGCACCAGGGGTGAATATAATAGCGGCTTTCTCTGAAGCAACATCCATATCTGGTTTACCTTATGATAAGCGTCAAGCTCAATTTATTACATTATCTGGCACTTCCATGTCATGCCCCCATATTTCTGGCATTGTCGGCCTTCTCAAAACGCTTTATCCAAAATGGAGTCCAGCAGCTATCAGATCTGCAATCATGACGACAGCCGAAACCGAAGCCAATGACTTAAATCCAATACTAACCTCAGAAAAGGAGAAAGCAAACCCATTGGCATATGGTGCAGGTCATGTCCAACCAAACAAAGCATCAAATCCTGGCCTTGTTTACGACCTCACCACCCAAGACTACTTGAACTTCCTATGTGCCCGTGGCTACAATAAAACACTATTGAAACTATTCACTAATGATACTTCATTTGTTTGTTCAAAGTCATTCAAAGTAACAGATTTAAACTACCCATCAATCTCAATGAATAATCTGAAATCAGAGGCAGTAGAGATCAAAAGAAGAGTAAAAAATGTGGGAAGTCCAGGCATGTATGTTGCTCAAGTCGAGGCACCACCAGGAGTTTCTGTTTCGGTAGACCCGAGTACTTTGAAGTTCACTAAAACTGATGAAGAGAAGGATTTCAAAGTTGTGCTAAGGAGGGTGCCAAATAATCAAACTGAACAGAATGTGTTCGGAAAACTTAAATAA 2328 41.67 MYNLKSEVVKIKRRVKNVGSPGTYVAKVEAPPGVLVSVDPSTLKFTKTGEEKDFQVVLRRVQSNQTEEKHVFEKLVWPDGKHRSYIVYLGSHSHGLNPSAIDLQRATQTHYNLLGSMLGSNEAAKEAIFYSYNRHINAFAAVLDQKVAEDIAIHENKKLKLHTTRSWNFLGVENDGGIPLDSLWNLSRFGESTIIGNIDSGVWPESKSFSDEGYGPIPTRWKGSCEGGTHFSCNRKLIGVRYFNKGFASDVGPLNSSYETARDVDGHGTHTLSTAGGNFVKGVSILGNSYGTAKGGSPKALVAAYKVCWSTDRGDGCFMADILASFEAAISDGVDVLSVSLGGGIQEFSDDLIAIGSFHAVKNGITVVCSAGNSGPSEDTVLNVAPWMITVGASTVDRLFTSYVGESLSSKLLPPKKFYPLIRALDAKSNNTSNHEAILCRQGSLNPEKVRGKIVVCLRGENSRGEKGYVVAQAGGVGMILANDKESGDELSASPHFLPASHISYTDAYMTSVTELGIKPAPIMASFSSRGPNIVEPSILKPDITAPGVNIIAAFSEATSISGLPYDKRQAQFITLSGTSMSCPHISGIVGLLKTLYPKWSPAAIRSAIMTTAETEANDLNPILTSEKEKANPLAYGAGHVQPNKASNPGLVYDLTTQDYLNFLCARGYNKTLLKLFTNDTSFVCSKSFKVTDLNYPSISMNNLKSEAVEIKRRVKNVGSPGMYVAQVEAPPGVSVSVDPSTLKFTKTDEEKDFKVVLRRVPNNQTEQNVFGKLK 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7712432 7722578 + CmaCh16G010020.1 Cma16g01002 311600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01002 775 ProSiteProfiles Serine proteases, subtilase domain profile. 166 647 - -
Cma16g01002 775 CDD PA_subtilisin_like 401 509 - -
Cma16g01002 775 SUPERFAMILY Subtilisin-like 161 651 IPR036852 GO:0004252|GO:0006508
Cma16g01002 775 Gene3D Peptidase S8/S53 domain 193 660 IPR036852 GO:0004252|GO:0006508
Cma16g01002 775 Pfam Fibronectin type-III domain 693 774 IPR041469 -
Cma16g01002 775 Pfam Fibronectin type-III domain 5 83 IPR041469 -
Cma16g01002 775 CDD Peptidases_S8_3 159 613 IPR034197 -
Cma16g01002 775 Gene3D - 1 89 - -
Cma16g01002 775 PRINTS Subtilisin serine protease family (S8) signature 577 593 IPR015500 -
Cma16g01002 775 PRINTS Subtilisin serine protease family (S8) signature 190 209 IPR015500 -
Cma16g01002 775 PRINTS Subtilisin serine protease family (S8) signature 263 276 IPR015500 -
Cma16g01002 775 Pfam Peptidase inhibitor I9 84 154 IPR010259 -
Cma16g01002 775 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 83 773 - -
Cma16g01002 775 Pfam Subtilase family 191 639 IPR000209 GO:0006508|GO:0008236
Cma16g01002 775 Pfam PA domain 439 508 IPR003137 -
Cma16g01002 775 Gene3D - 664 775 - -
Cma16g01002 775 SUPERFAMILY PA domain 432 515 IPR046450 -
Cma16g01002 775 ProSitePatterns Serine proteases, subtilase family, serine active site. 578 588 IPR023828 -
Cma16g01002 775 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 3 81 - -
Cma16g01002 775 Gene3D - 397 517 - -
Cma16g01002 775 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 3 81 IPR045051 -
Cma16g01002 775 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 83 773 IPR045051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00988 Cma-Chr16:7599287 Cma16g01002 Cma-Chr16:7712432 1.92E-23 dispersed
Cma16g00989 Cma-Chr16:7617953 Cma16g01002 Cma-Chr16:7712432 4.22E-32 dispersed
Cma16g00999 Cma-Chr16:7698565 Cma16g01002 Cma-Chr16:7712432 4.38E-12 dispersed
Cma16g01000 Cma-Chr16:7709307 Cma16g01002 Cma-Chr16:7712432 1.79E-103 dispersed
Cma16g01002 Cma-Chr16:7712432 Cma06g00693 Cma-Chr6:3478009 2.39E-14 dispersed
Cma16g01001 Cma-Chr16:7711593 Cma16g01002 Cma-Chr16:7712432 6.03E-92 tandem
Cma13g00339 Cma-Chr13:3920324 Cma16g01002 Cma-Chr16:7712432 6.78E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01002 - - bhj:120090550 987.252