Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01003 ATGGCGATGCCTTCGCGGGAAGCAATTGATACTTTCATCGGCGTTACCGGAGCATCCGAAGCGATCGCCGTTCAGAGCCTCGAGGCGCATGGTGCTGATCTCAATGCTGCTGTGAATGCATATTTCAATGAAGGAGATAGAAGTTCGTCCGTAAATGCACGTCAAACCTCTGTTTCTGGTGAATATGATTTCATGGACATTGATGATCCGGTTGAAGTTGAACCCCATGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGGGAATGATTCCATTTTCGTTACTTGACCGAAATCTCCGCCAGGGGTTCTTTGATCGCCCCTCTGATTTTACAAGTTCTGCTCCAGTTGTGACTCATCCAAGAGAGGTGAGGGAGATTCCCATAGAATTTAGAGATGGTAATCGACCATCTGGCCAATCTGGCCAATCTGGCCATGAGCCGACAATTGAGGATGTCACTGGGACTGTAGATGCCCATGTTCCAGAGGTTCGTGGAACTGTAGTAATTGATGATAATGAAGATGAAGAACCTCCAGTTACTTCTACGGCATGTGCACCATATTTAGAGAATCGCGCTGTTTCAAGTATCATATCTCGTGGCAGAAATGCTGTACCCGGTGCCTTTGAAAGTAATGAGTTCCAAGACAGAAATGACATTGAAGAAGAAATGATTCGTGCTGCGATTGAGGCTTCAAAGAAGGATGTTGTGCAAGCTTATCCAAGCGATCCCTTAACTACACATACTGATTCAAGCAATCTTAGGACTGAAGAACATATTTCTCCCTTGAATAATTTTGAAGTTTCACATGCAGCTTCATCTATCAAGCCAGATGAAGCTTTCCCTGAGCGAGGGGAGAACATTGGAGGATCGAAAATAGCAGATTCTAAGTCAACTGAGGTGGAGCTGAGGAAAGGTAGAGCACTAAATGGAAGGATGGAAGCAGGAAGCACGTCTTTTCAAGACGAGGTTGAAGACCTAGAGCAAGATAATTTAGTTAGGCATCGGTCCAAACGCAAGTCCTCTGGCTATGTTGAGCCTGCAAAGGGGGTTGAAGTTGATGTAAGCCTTGCATCTAGTCCCAAGCATTCCGGTGCTGGTAATAATTCACAGCACAATGGGAGTATCTTTCGTTCTGATGAGTGGGGTGGAATTTCTTCAGAGGAGCATGATGAAGCAGTCATGCTTGAGGCGGCCATGTTTGGTGGAGGTTCTGAAGGAAGTTCATATAATTTTCCATCTGCACCTCATGAATTCATGAGAAATCAAGGTTCATATATGCAGCCAGCCCCTCGCCCTCCTTCTCCCACTTTAGTAGCTCAGCGTTTGATTAGGGAACAACAGGATGATGAGTATCTTGCAGCCTTACAAGCTGACAAAGAAAAAGAACTGAAGGCAATGGCAGAAGCTGCTGCTGTTCTTGAAGAAGAAAAACAAAGAGAGGAGGAATCCCGTCAGAAATTGGATGCTGAGAAGGAACTTGAAAGACACTTGGCAAAAATAGAAGCTTCTCTTCCTAGTGAACCAAGAACAGATGATGAGAATGCTGTGACACTATTAGTGCGCATGCCCGATGGCAGTCGCCGTGGTCGTCGATTTCTCAAAACTGATAAGCTACAGTGTCTCTTGGACTTCATTGATATTGGTAGAGTTGTGAAGCCTGGCTCCTACAGATTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGATGGGGAGAGTTCTTCAACGTTGAATGAACTTGGACTTAACAGCAAACAAGAAGCCTTATTTCTGGAGTTGATTTAA 1785 45.15 MAMPSREAIDTFIGVTGASEAIAVQSLEAHGADLNAAVNAYFNEGDRSSSVNARQTSVSGEYDFMDIDDPVEVEPHGPPRSLLSTAREGMIPFSLLDRNLRQGFFDRPSDFTSSAPVVTHPREVREIPIEFRDGNRPSGQSGQSGHEPTIEDVTGTVDAHVPEVRGTVVIDDNEDEEPPVTSTACAPYLENRAVSSIISRGRNAVPGAFESNEFQDRNDIEEEMIRAAIEASKKDVVQAYPSDPLTTHTDSSNLRTEEHISPLNNFEVSHAASSIKPDEAFPERGENIGGSKIADSKSTEVELRKGRALNGRMEAGSTSFQDEVEDLEQDNLVRHRSKRKSSGYVEPAKGVEVDVSLASSPKHSGAGNNSQHNGSIFRSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYNFPSAPHEFMRNQGSYMQPAPRPPSPTLVAQRLIREQQDDEYLAALQADKEKELKAMAEAAAVLEEEKQREEESRQKLDAEKELERHLAKIEASLPSEPRTDDENAVTLLVRMPDGSRRGRRFLKTDKLQCLLDFIDIGRVVKPGSYRLVRPYPRKAFGDGESSSTLNELGLNSKQEALFLELI 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7729059 7734656 + CmaCh16G010030.1 Cma16g01003 311601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01003 594 PANTHER FAS-ASSOCIATED PROTEIN 1 594 - -
Cma16g01003 594 SMART ubx_3 509 593 IPR001012 GO:0005515
Cma16g01003 594 Pfam UBA-like domain 6 47 - -
Cma16g01003 594 PANTHER OS09G0525600 PROTEIN 1 594 - -
Cma16g01003 594 MobiDBLite consensus disorder prediction 278 299 - -
Cma16g01003 594 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Cma16g01003 594 CDD UBX 518 592 - -
Cma16g01003 594 SUPERFAMILY Ubiquitin-like 476 587 IPR029071 -
Cma16g01003 594 CDD UBA_Ubx1_like 6 42 - -
Cma16g01003 594 Gene3D - 513 593 - -
Cma16g01003 594 ProSiteProfiles UBX domain profile. 512 590 IPR001012 GO:0005515
Cma16g01003 594 Coils Coil 457 500 - -
Cma16g01003 594 Gene3D - 5 45 - -
Cma16g01003 594 Pfam UBX domain 513 592 IPR001012 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01003 - - - cmos:111449021 951.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00934 Cma-Chr2:5553181 Cma16g01003 Cma-Chr16:7729059 9.34E-13 dispersed
Cma13g00873 Cma-Chr13:7120401 Cma16g01003 Cma-Chr16:7729059 2.38E-11 dispersed
Cma15g01308 Cma-Chr15:8243397 Cma16g01003 Cma-Chr16:7729059 2.03E-13 dispersed
Cma08g00084 Cma-Chr8:440199 Cma16g01003 Cma-Chr16:7729059 5.77E-08 transposed
Cma16g01003 Cma-Chr16:7729059 Cma06g00707 Cma-Chr6:3551820 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g369 . . . . . . . . Cmo06g00724 Cmo16g01046 . . . . . . . . . . . . . . Cla10g00353 . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01003 Car06g00629 . Cpe08g00807 . . . . . . . . . . . . . . . . . Chy06g01938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01003 Cma_Chr16 FPKM 14.806458 15.91804 36.496689 35.309055 11.620434 12.539883 12.448973 33.02771 30.021051 32.847908