Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01004 ATGTTGGCTGGGTGTTCTAGTTCAACATTGCTCTCGCCAAGGAATCATTTGAGAAGTGAAGTAGTACAGTCGCCGTTTCAAGCTTGCCTTTTGCAGTTTCCGCCTTCAATGAGCGCACAGAGATTGGATTTGCCCTGCAGCTTTTCCCACTCAAAAGACGCCTCTTCCGTCGTTCGATCCCCGTCGATCCGTCCGGTTGCTCTCTCGGTCGAGAAGCAGAGCATCAGGCTTCCGCCGCTATCCGCTGCTAACCAGCAAATCAAGCAAGAGTTTTGGAATGGGAAAGGTAAGAACTTGAAGAGAATTGCAGAGCAAGTTGGGATTGATGATGATGATGAATCTTCCATTAGCAATGCCAAGAGGAAGAGAGCGTGCAGAGACGACATAGGAGACGGGCTGATTCTGAGCCAATTCGGCGGTGGGGTTCGGAGTTTCTGGTATCATCAACAGCCTGATGGGGATGAAGGACTCTGCTTTCTTCCTGGAAGTTCAACGTCGCCGTTTATGTCAGAGATCGCTGATTTGGGAGAAGGAAATGACGGAGAAAGCAGCCAAGTGAAGGCGCAGGACAGCTCGGACTCGGTCTCCGGTTCAGATTCGGGGTCGAGTTCATCATCAGGAAGTGAGAGATTTGCAGCAGCAGAAGCAGGGCCAGAAATTGGAAATGGGAGCTCAAGAAATCCTTCATATCATCACCATCAAGGCTCTGGCTCAGAAAATGAGAGAGGAGAAGAAGAATCATTTGAGCTGTTGAGTGTTCTAATGGCATGTGTGGAAGCAATAAGATCAAAGAACATTACTTTGATTAACCATTTGATAGAAAAACTTGGTAGCCAAGCTTCACCAAGAGGTTCATCACCCATTACACGTTTGATTGCGTATTACACAGAGGCTTTAGCAGTAAGAGTGAGCAGAGTTTGGCCACAAGTGTTTCACGTAAGGCCGCCGAGGGAATACAATCGGATCGACGACGATACAGGTATAGCGTTACGTCTTCTAAACGAGGTGAGTCCGATCCCGAAATTCATCTACTTCACAGCAAATGAGATGTTGCTGAGAGCATTTGAAGGGAAAGACAAGGTTCACATCATAGACTTTGACATAAAGGAAGGGCTGCAATGGCCGAGCTTGTTTCAGAGTTTGGCATCTCGAGTGAATCCTCCGAGTCATGTCCGAATCACCGGGATCGGTGAATCGAAGCAGGAATTGAACGAAACGGGAGATAGGCTGGCGGGGTTCGCCGAGGCATTGAGGCTGCCGTTCGAGTTCCACGCGGTGGTGGACCGGTTGGAGGATGTGAGACTATGGATGCTTCATGTCAAGGAGAATGAGAGTGTAGGAGTGAATTGCATTCTCCAACTGCACAAGACTCTGTATGATAATAACATCAATGGTGGCGGGGGAGCATTGAAGGACTTTTTGGGGCTTATAAGAAGCACGAACCCGAGAATTGTTGTGATGGCCGAGCAAGAAGCCGAGCACAACGACCCGAGATTGGAGACTCGAGTTGCAGCCACAATTAAGTACTATGGTGCCATATTCGACTCCCTCGACACTAGCCTTCCACCGAACAGCTCGGGAAGGTTGAAAATCGAGGAGATGTTTGGGAGGGAGATAAGGAACATGATAGGATGTGAAGGAAGGGAGAGGTATGAAAGGCATGTTGGATTTGAGAAATGGAAGAAAGTGATGGAGAAGCAAGGAGGGCTGCGATGCGTCGGGATTCGGGACGATCGAGAGCTTCTTCAGAGCCAAATCCTGTTGAAAATGTACTCATCAGCTGATGGATTCAATGTGAGAAAGATTGGAGAAGGAGGAGCTCAAGCAGTTTGCTTAGCTTGGGAAGAACAACCACTTTACAGTGTGTCAGGATGGACAGCAGCAGAAATATCTTGA 1896 48.36 MLAGCSSSTLLSPRNHLRSEVVQSPFQACLLQFPPSMSAQRLDLPCSFSHSKDASSVVRSPSIRPVALSVEKQSIRLPPLSAANQQIKQEFWNGKGKNLKRIAEQVGIDDDDESSISNAKRKRACRDDIGDGLILSQFGGGVRSFWYHQQPDGDEGLCFLPGSSTSPFMSEIADLGEGNDGESSQVKAQDSSDSVSGSDSGSSSSSGSERFAAAEAGPEIGNGSSRNPSYHHHQGSGSENERGEEESFELLSVLMACVEAIRSKNITLINHLIEKLGSQASPRGSSPITRLIAYYTEALAVRVSRVWPQVFHVRPPREYNRIDDDTGIALRLLNEVSPIPKFIYFTANEMLLRAFEGKDKVHIIDFDIKEGLQWPSLFQSLASRVNPPSHVRITGIGESKQELNETGDRLAGFAEALRLPFEFHAVVDRLEDVRLWMLHVKENESVGVNCILQLHKTLYDNNINGGGGALKDFLGLIRSTNPRIVVMAEQEAEHNDPRLETRVAATIKYYGAIFDSLDTSLPPNSSGRLKIEEMFGREIRNMIGCEGRERYERHVGFEKWKKVMEKQGGLRCVGIRDDRELLQSQILLKMYSSADGFNVRKIGEGGAQAVCLAWEEQPLYSVSGWTAAEIS 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7735848 7737743 - CmaCh16G010040.1 Cma16g01004 311602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01004 631 Pfam GRAS domain family 251 626 IPR005202 -
Cma16g01004 631 ProSiteProfiles GRAS family profile. 241 626 IPR005202 -
Cma16g01004 631 MobiDBLite consensus disorder prediction 169 244 - -
Cma16g01004 631 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 628 IPR005202 -
Cma16g01004 631 PANTHER SCARECROW-LIKE PROTEIN 28 6 628 IPR030027 -
Cma16g01004 631 MobiDBLite consensus disorder prediction 182 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01004 - - - cmo:103490990 977.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01004 Cma-Chr16:7735848 Cma04g02984 Cma-Chr4:19554944 7.37E-73 dispersed
Cma16g01004 Cma-Chr16:7735848 Cma06g00708 Cma-Chr6:3557963 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g738 . . . . . Bpe08g01076 . . . . . . . . . . . . . . . . . . Cla10g00394 Cam10g0394 Cec10g0416 Cco10g0406 Clacu10g0401 Cmu10g1234 Cre10g0649 . . . Cone15ag1292 . Csa03g00399 . Cme06g02730 . . . . . . . . Sed08g2892 . . . Cma16g01004 . Car16g00958 Cpe14g00794 . Bhi11g00437 Tan01g1869 Cmetu06g2755 . Hepe06g0640 Mch10g1419 . . . . . . . . . . Chy06g01913 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004828 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 0 4 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36588 PF03514 GRAS 1.50E-119 CL0063 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01004 Cma_Chr16 FPKM 9.53692 8.537335 0.33926 0.506676 35.643822 38.774612 35.228809 0.0 0.063836 0.065301