Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01005 ATGGGTCTTAATTTCTCTTCGTTTTTTTGCCTCCGTAATGGCTCTCACCCACCGTCGCCACCGCCGTATCCCGGCCTCGGGGACTTGCCGGAGAACTGCGTGGCGGATGTTTTGGGGCATTTGAGTCCGGTGGAGATTTGTAGACTTGCGAGGTTGAATCGGGCCTTTCGTGGGGCTTCCTGGGCTGATTTCGTTTGGGATTCCAAATTGCCGTCTAATTATAGGGTTCTTGTTCAACGATTGTTTGGTGATTTTGTTCAGATTATGAGTAAAAGAGAGATTTATACGAAGCTTTGTCAACAGAATCCATTGGATGGTGGAAATAAGAAAGTTTGGCTGGATAAACATTCTGGTGGTGTTTGTTTATCGATTTCTTCCATGGATTTGAGGATTACTGGGATTGATGATCGGAGGTATTGGAATCGCATCTCCACTGAAGAATCGAGATTCCACACTGTTGCATATCTTCAGCAAGTATGGTGGTTTGAAGTTGGTGGAGAGGTCGACTTTCCGTTTCCACCGGGAAGTTACAGTCTATACTTCAGGTTACAATTGGGTCGGACATCGAAGAGGTTTGGGCGTCGAATCTGTAACCTCGAGCACGTTCATGGTTGGAACATAAAGCCTGTGCAATTCCAGCTTTGGACTTCAGATGGTCAGCATGCTAAAACTCGATGCTATTTAGTGGAATCTGGGAAATGGACTCTGTATCGTGCAGGTAACTTCAATGTCGATGCTCGAAATGAATCGACAAGGGTCAAATTCTCTATGACTCAGATCGACTGCACGCACACGAAAGGCGGGCTGTGTTTAGATGCAGTGATGATCTGCCCGGTCGAGTACGAACAGATATCCCAGTGTCGTTGA 867 46.48 MGLNFSSFFCLRNGSHPPSPPPYPGLGDLPENCVADVLGHLSPVEICRLARLNRAFRGASWADFVWDSKLPSNYRVLVQRLFGDFVQIMSKREIYTKLCQQNPLDGGNKKVWLDKHSGGVCLSISSMDLRITGIDDRRYWNRISTEESRFHTVAYLQQVWWFEVGGEVDFPFPPGSYSLYFRLQLGRTSKRFGRRICNLEHVHGWNIKPVQFQLWTSDGQHAKTRCYLVESGKWTLYRAGNFNVDARNESTRVKFSMTQIDCTHTKGGLCLDAVMICPVEYEQISQCR 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7742864 7745147 + CmaCh16G010050.1 Cma16g01005 311603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01005 288 Pfam Phloem protein 2 120 278 IPR025886 -
Cma16g01005 288 PANTHER F-BOX PROTEIN PP2-A15 1 284 - -
Cma16g01005 288 SUPERFAMILY F-box domain 17 98 IPR036047 GO:0005515
Cma16g01005 288 PANTHER F-BOX PROTEIN PP2-A12 1 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01005 - - - csv:101209307 512.686
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01106 Cma16g01005 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01043 Cma-Chr2:6215586 Cma16g01005 Cma-Chr16:7742864 1.32E-107 dispersed
Cma06g00432 Cma-Chr6:2000335 Cma16g01005 Cma-Chr16:7742864 1.02E-47 dispersed
Cma06g01106 Cma-Chr6:7469583 Cma16g01005 Cma-Chr16:7742864 2.62E-107 dispersed
Cma14g00257 Cma-Chr14:1120366 Cma16g01005 Cma-Chr16:7742864 1.86E-73 dispersed
Cma14g02008 Cma-Chr14:14070392 Cma16g01005 Cma-Chr16:7742864 1.18E-107 dispersed
Cma16g01005 Cma-Chr16:7742864 Cma14g01884 Cma-Chr14:13328421 6.17E-25 dispersed
Cma16g01005 Cma-Chr16:7742864 Cma06g00709 Cma-Chr6:3563238 7.50E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g396 . . Bda06g00074 . . Bpe07g00125 . . Cmo06g01134 Cmo16g01048 . . . . . . . . . . . . . . Cla10g00351 Cam10g0363 Cec10g0381 Cco10g0376 Clacu10g0367 Cmu10g1203 Cre10g0618 . . . . Lsi07g01414 . . Cme06g02700 . . . . . . . Bma12g00101 . . . Cma06g01106 Cma16g01005 Car06g00943 . Cpe08g00511 . . . . . . . . . . . . . . . . Csa03g00373 Chy06g01940 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01005 Cma_Chr16 FPKM 5.505982 5.583812 15.850056 16.084396 6.97737 7.481557 7.743571 11.075912 10.910752 13.520202