Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01011 ATGGCCTCTACCTCCTCCAATAGACATGGAAACTACAAGGGAGTCCGCTGCCGGAGTGGCAAATGGGTGTCGGAGATTCGTGAGCCACGTAAGACTACTCGAATATGGCTCGGCACGTATCCGACGTCGGAGATGGCAGCTGCTGCCTACGACGTGGCTGCGCTGGCTCTCAAGGGTAGCAATGCTGTTCTCAACTTCCCGGACTCGATTCGCTCCTACCCAATTCCGGCTTCCAAATCCCCAGCTGATATTCGTCTCGCTGCTGCCGCTGCAGCCGCGACAAAAAAGGTTGATCAAGGAGAAAGTAATAACCATAGCTGCCACCAGTCTCCACCTTCCGATGAGTTCGTTGATGAAGAGGCACTGTTCGGAATGCCCAATTTGCTGCATGACATGGCGGTGGGAATGCTGTTGCCGCCGCCGCGAATGAGTGGCTCGCCGTCATCACATGACTGCTACTCATGGAACTCCACCGGAGATGAAAATCTTTGGAGCTACCATTAG 504 54.37 MASTSSNRHGNYKGVRCRSGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNFPDSIRSYPIPASKSPADIRLAAAAAAATKKVDQGESNNHSCHQSPPSDEFVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSYH 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7766235 7766738 + CmaCh16G010110.1 Cma16g01011 311609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01011 167 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Cma16g01011 167 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Cma16g01011 167 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Cma16g01011 167 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Cma16g01011 167 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Cma16g01011 167 PRINTS Ethylene responsive element binding protein signature 49 69 IPR001471 GO:0003700|GO:0006355
Cma16g01011 167 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Cma16g01011 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 166 - -
Cma16g01011 167 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
Cma16g01011 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 5 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01485 Cma-Chr2:8491930 Cma16g01011 Cma-Chr16:7766235 2.49E-51 dispersed
Cma06g00710 Cma-Chr6:3573295 Cma16g01011 Cma-Chr16:7766235 1.03E-80 dispersed
Cma16g01011 Cma-Chr16:7766235 Cma18g01218 Cma-Chr18:9619192 7.39E-44 dispersed
Cma15g01198 Cma-Chr15:7589726 Cma16g01011 Cma-Chr16:7766235 1.18E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36589 PF00847 AP2 1.20E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01011 - - csv:101202953 267.7