Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01014 ATGGGTTCTTGCCATTCGTCTCTAAAAGGGCGGCAGAGCAGAGGCGGCGCTGATTCTGCCGCGGCGGCGGAATCCCCAATAGCTTCTACAATCAACTCATTTTCTTCTGCTTCTTCGTTTTTGTACTCTAAGACCAGTAAGTCGCGTTGGTGGAAGAACAATTCCACTAAAACTTTCGGCGTTGGGGTTTGTTCAGAGAAGGTTCATGAATTTGAGGTTCCAGGGCGGATTTGTTCAAATGGGTCATCGAGAATCGCTTGTTTGTATACGCAACAGGGGAAGAAAGGGGTTAATCAAGATGCCATGGTTGTGCATGAGGCTTTCGGTTCGAAAAGAGATACAATATTTTGTGGGGTATTTGATGGACATGGTCCTTTTGGACATATGGTTGCGAAAAAGGTTCGCGATACCCTTCCTCTAATCCTATGTACACAATGGACATCTAAATCAAACGAAGATCAAAGCAGCGTCGTTAAGACGAACCATTCCAGAAGTTTAAATTCTGAAAATTCCGTTGCTCTGGACGGCGATGAAGATTCATACAAGTCACTGGAGGCCGAGGAAAATGAAAAATTCCCCAAGATGTTTCTGCCACTCAAAGTATCTTTACTGAAGTCCTTCAAATTAATGGATAAAGAGTTGAAACTGCATCCGAAAATTGATTGTTTTTGCAGTGGATCGACGGCTGTGACTCTAATAAAGCAGGGTCAGAACCTTATACTTGGAAATGTTGGTGACTCGAGAGCGGTGCTGGCTACAATCGACGAAGATAACTCTTTGATTCCCGTTCAGCTAACGGTGGACTTGAAACCCGACCTTCCTGCTGAAGCTGCTAGGATCCAGCAATGCAAAGGACGGGTCTTCGCTTTACAGGATGAGCCCGAAGTTGCACGAGTGTGGTTGCCTAATAACGATTCACCTGGTTTGGCAATGGCGAGAGCTTTCGGGGACTTTTGTCTGAAGGATTTTGGTCTAATTTCTGTTCCCGATGTTTATTATCGTCACCTTACGGCGAGAGATCAGTTCGTAATTCTTGCCACTGATGGGGTTTGGGACGTCCTTTCAAATAAAGAAGCTATTGAAATTGTTGCTTCAGCCCCATCTCGCGAAACATCAGCCAGGGCTCTTGTTGACTGTGCCGTTCGTGCATGGAGGTTGAAATATCCGACATCCAAGAACGATGATTGTGCTGTTGTATGTCTCTTTCTCGAGTACGAGCCTGAAATAGAAGAAAACACAGCCACTAAACCAGTGGAAGAAGTTCTGGCCCCGCCGAGCGAGGACACTAAAGATATTGAAGTTGATTATGATGATCATGGCACGATTGGAAGCTCTAATGAGATTGTACCTGTCGCAGACACAACAGACGAGAAGGTTGGAGGTGGTGGTCGAAACCCGTCGAAGAGAAGCTTAGCGGAGTGCATTTCGAATGAAGAGGAGGAATGGTCAGCATTGGAGGGTGTTACCAGAGTGAATAGTCTCCTAAGCCTTCCTAGGTTCTTGTCTGGTGACAAAAGGTCAGGCAGCTGGAGGAAGTGGCTATGA 1545 46.02 MGSCHSSLKGRQSRGGADSAAAAESPIASTINSFSSASSFLYSKTSKSRWWKNNSTKTFGVGVCSEKVHEFEVPGRICSNGSSRIACLYTQQGKKGVNQDAMVVHEAFGSKRDTIFCGVFDGHGPFGHMVAKKVRDTLPLILCTQWTSKSNEDQSSVVKTNHSRSLNSENSVALDGDEDSYKSLEAEENEKFPKMFLPLKVSLLKSFKLMDKELKLHPKIDCFCSGSTAVTLIKQGQNLILGNVGDSRAVLATIDEDNSLIPVQLTVDLKPDLPAEAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRHLTARDQFVILATDGVWDVLSNKEAIEIVASAPSRETSARALVDCAVRAWRLKYPTSKNDDCAVVCLFLEYEPEIEENTATKPVEEVLAPPSEDTKDIEVDYDDHGTIGSSNEIVPVADTTDEKVGGGGRNPSKRSLAECISNEEEEWSALEGVTRVNSLLSLPRFLSGDKRSGSWRKWL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7794965 7801718 + CmaCh16G010140.1 Cma16g01014 311612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01014 514 Gene3D - 78 405 IPR036457 -
Cma16g01014 514 PANTHER ALPHABET, ISOFORM E-RELATED 1 498 - -
Cma16g01014 514 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 1 498 - -
Cma16g01014 514 SUPERFAMILY PP2C-like 79 404 IPR036457 -
Cma16g01014 514 CDD PP2Cc 84 403 IPR001932 -
Cma16g01014 514 MobiDBLite consensus disorder prediction 1 21 - -
Cma16g01014 514 ProSiteProfiles PPM-type phosphatase domain profile. 85 403 IPR001932 -
Cma16g01014 514 Pfam Protein phosphatase 2C 191 380 IPR001932 -
Cma16g01014 514 SMART PP2C_4 74 401 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00117 Cma-Chr2:588445 Cma16g01014 Cma-Chr16:7794965 1.55E-148 dispersed
Cma16g01014 Cma-Chr16:7794965 Cma17g00593 Cma-Chr17:4918065 1.28E-145 dispersed
Cma17g00347 Cma-Chr17:1887173 Cma16g01014 Cma-Chr16:7794965 8.52E-106 dispersed
Cma16g01014 Cma-Chr16:7794965 Cma01g00483 Cma-Chr1:2450184 2.35E-164 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01014 - - cmo:103490977 887.1