Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01017 ATGTGGCTTCTTTTGATTGGAGCTATTGTTGTTGTAAGTTTTACACACTGGCTTTATAGATGGAGAAATCCCAAATGTAATGGAAAACTTCCACCAGGTTCAATGGGGTTTCCTCTACTTGGTGAAACCCTGCAGTTCTTTGCTCCCAATACCTCCTCTGATATTCCTCCTTTCGTCAGAAACAGAATGGATAGGTATGGACCGATATTCCGAACGAGTTTGGTGGGAAGACCGTTGATTGTCTCGACAGACCCTGACTTGAATTACTATATCTTTCAAGAAGAGGGACAATTGTTCCAGAGCTGGTATCCTGATACCTTCACAGAGATATTTGGAAGGCAAAATGTTGGTTCGCTGCACGGTTTCATGTATAAATATCTTAAGAACATGGTTCTTCATCTTTTTGGCCCTGAAAGTCTGAGAAAGATGATACCTGAAGTTGAGGCTGTAGCAAATCAAAGATTGAGACAATGGTCATCTCAAAACTCAGTTGAATTGAAGGATAATACTGCAAGTATGATTTTTCATCTGACTGCAAAGAAGCTGATTAGTTATGATTCAGAAAATTCTTCGGAGAATTTGAGAGAGAACTTTGTTGCATTCATACAGGGCTTGATCTCCTTCCCTCTAAATGTTCCCGGAACTGCTTATAACAAATGCTTACAGGGCCGGAAAAGAGCAATGAGGATGCTGAAGAACATGTTACAAGAAAGGCGAGCAAATCCAAGGAAACAACAAATAGATTTTTTTGATTTTGTTCTTGAAGAACTGGAGAAAGATGGAACTCTTCTCACTGAGGAAATTGCTTTGGACCTTATGTTTGTACTACTTTTTGCAAGCTTTGAAACTACTTCACTTGCTATTACAGCAGCCATCAAATTTCTCCTCAACAATCCTCATGTGCTAGAGGAGCTGATGGCTGAACATGAGGGAATATTGAAGAGAAGGGAAAATGCACATTCTGGGCTTACTTGGGAGGAATACAAATCCATGACATTCACATTTCAGTTTATCAATGAAACGGCGAGACTGGCAAATATAGTTCCAGGAATCTTTCGAAAAGCACTAAGAGATATCCAGTTTAAGGGATATACCATTCCAGCAGGCTGGGCTGTTATGGTCTGCCCTCCAGCCGTGCACTTAAACCCGGAAAAGTACGTCGATCCCCTTGCTTTTAACCCGTGGCGATGGGAGAAATCTGAACTGAAGGGAGCCTCTAAACATTTCATGGCTTTTGGTGGGGGCATGAGGTTCTGTGTTGGTACAGATTTTACCAAAGTTCAAATGGCTGTGTTTCTCCATTGTCTGGTTACAAAGTACAGGTTCAAAGCAATCAAAGGAGGCAACATCGTCCGAACTCCCGGTTTACAGTTCCCGGACGGCTTTGACGTTCAGATCATGGAGAAATAA 1410 41.63 MWLLLIGAIVVVSFTHWLYRWRNPKCNGKLPPGSMGFPLLGETLQFFAPNTSSDIPPFVRNRMDRYGPIFRTSLVGRPLIVSTDPDLNYYIFQEEGQLFQSWYPDTFTEIFGRQNVGSLHGFMYKYLKNMVLHLFGPESLRKMIPEVEAVANQRLRQWSSQNSVELKDNTASMIFHLTAKKLISYDSENSSENLRENFVAFIQGLISFPLNVPGTAYNKCLQGRKRAMRMLKNMLQERRANPRKQQIDFFDFVLEELEKDGTLLTEEIALDLMFVLLFASFETTSLAITAAIKFLLNNPHVLEELMAEHEGILKRRENAHSGLTWEEYKSMTFTFQFINETARLANIVPGIFRKALRDIQFKGYTIPAGWAVMVCPPAVHLNPEKYVDPLAFNPWRWEKSELKGASKHFMAFGGGMRFCVGTDFTKVQMAVFLHCLVTKYRFKAIKGGNIVRTPGLQFPDGFDVQIMEK 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7840012 7844182 + CmaCh16G010170.1 Cma16g01017 311615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01017 469 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 412 421 IPR017972 GO:0005506|GO:0016705
Cma16g01017 469 SUPERFAMILY Cytochrome P450 27 453 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS E-class P450 group I signature 268 285 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS E-class P450 group I signature 288 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS E-class P450 group I signature 335 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS E-class P450 group I signature 375 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS E-class P450 group I signature 409 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS E-class P450 group I signature 419 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PANTHER CYTOCHROME P450 26 8 466 - -
Cma16g01017 469 Gene3D Cytochrome P450 22 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 Pfam Cytochrome P450 31 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS P450 superfamily signature 279 296 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS P450 superfamily signature 410 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PRINTS P450 superfamily signature 419 430 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma16g01017 469 PANTHER CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 2 8 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02810 Cma-Chr4:18815984 Cma16g01017 Cma-Chr16:7840012 6.18E-96 dispersed
Cma15g00224 Cma-Chr15:1106539 Cma16g01017 Cma-Chr16:7840012 2.97E-95 dispersed
Cma16g01017 Cma-Chr16:7840012 Cma16g01022 Cma-Chr16:7867556 5.60E-67 proximal
Cma08g00034 Cma-Chr8:181823 Cma16g01017 Cma-Chr16:7840012 1.04E-162 transposed
Cma14g01069 Cma-Chr14:5808081 Cma16g01017 Cma-Chr16:7840012 0 transposed
Cma18g00116 Cma-Chr18:574413 Cma16g01017 Cma-Chr16:7840012 7.43E-139 transposed
Cma16g01017 Cma-Chr16:7840012 Cma06g00719 Cma-Chr6:3632376 3.32E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01017 - - csv:101209473 894.034