Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01019 ATGGCATCTTCAAGGTCTCCGAATGGATCGTCTGACGATATCGTTGATACCTCCCCCTTGATGGGGAATTCGAATCGGTCGCTTGATGAAACGCATTCGGGTAGGCGATTTGTGCAGAGGCAAAGTCTGCGTCAGGCGGCGAGGTTTCTGAGGCAGGCGAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACAGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTCATCCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTGAGCCGCAACGAGTCTCCTACAATGCCTTTGAGGTTGTGGATTGTGGGGTATGCGTTTCAATGCGTTCTCCATATGGTGTGTGTTATTGTGGAGTATCGTCGCCGCCAGCGGCGGCGCTATTCAGACTTCAATTCGATGGATGAGGGAAATTCTGCACGGGGGCTTTCCGGTTTGGGGTCGAGAGGGAACTCGAGTCATTATGTATCATTGGCGCACCTGGATGATAACGACACCAGTGTAGCAAAGCACCTGGAATCTGCAAATACTATGTTTTCCTTCATCTGGTGGATTATTGGATTCTACTGGGTATCCGCAGGAGGCCAATCTTTAGCACACGTCTCCCCTCTGCTTTACTGGTTATGCATCATATTCTTGGGTTTTGATGTCTTCTTTGTGGTCTTCTGTGTTGCTTTGGCATGTATCATTGGAATCGCTGTTTGCTGTTGTCTTCCCTGTATCATTGCACTTTTGTATGCTGTAGCAGACCAGGAAGGAGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTACATTCAGAAAGGTTGATGATGCAGAGAAATTCTCCGCTGATGTACAGGAACCTCTTGGTGGCATAATGACCGAATGTAGTACAGATTCACCCATTGAACGTGCCCTCTCACAGGAGGATGCGGAGTGCTGCATCTGCCTTTCTGCGTATGAGGATGGCGTTGAGCTACGAGAACTCCCATGTGGTCACCATTTCCACTGTGCCTGTGTCGATAAGTGGCTGTATATTAATGCTACCTGTCCTCTCTGCAAGTACAACATCCTGAAAAGTAGCAACCTTGCTCAAGAGGAAGTTTGA 1152 48.7 MASSRSPNGSSDDIVDTSPLMGNSNRSLDETHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPTMPLRLWIVGYAFQCVLHMVCVIVEYRRRQRRRYSDFNSMDEGNSARGLSGLGSRGNSSHYVSLAHLDDNDTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFTFRKVDDAEKFSADVQEPLGGIMTECSTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLAQEEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7845400 7852398 - CmaCh16G010190.1 Cma16g01019 311617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01019 383 MobiDBLite consensus disorder prediction 1 35 - -
Cma16g01019 383 CDD RING-H2_RNF111_like 327 371 - -
Cma16g01019 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 382 IPR013083 -
Cma16g01019 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Cma16g01019 383 SMART ring_2 328 368 IPR001841 -
Cma16g01019 383 PANTHER TARGET OF ERK KINASE MPK-1 6 383 - -
Cma16g01019 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 383 - -
Cma16g01019 383 MobiDBLite consensus disorder prediction 1 28 - -
Cma16g01019 383 Pfam Ring finger domain 327 369 IPR001841 -
Cma16g01019 383 SUPERFAMILY RING/U-box 319 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01102 Cma-Chr6:7440315 Cma16g01019 Cma-Chr16:7845400 4.65E-140 dispersed
Cma14g02015 Cma-Chr14:14098883 Cma16g01019 Cma-Chr16:7845400 1.33E-144 dispersed
Cma15g00981 Cma-Chr15:5540924 Cma16g01019 Cma-Chr16:7845400 8.14E-94 dispersed
Cma16g01019 Cma-Chr16:7845400 Cma06g00724 Cma-Chr6:3667292 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01019 - - csv:101209228 680.633