Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01020 ATGGCGTCTTCTTCAGGAAGCAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTTGCTGACATTGTGGGCAATGAAGAAGCAGTTTCTCGGCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATTTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTCTGGCTCTTGCTCACGAGCTCTTGGGACCAAATTACAAGGATGGTGTTCTGGAGCTTAATGCATCAGATGAAAGGGGAATAGACGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCGAACACAACACGTTTTGCACTTGCATGTAATACCTCCTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCAATTGTTCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTACTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACCGCTGATGGTGATATGAGGCAAGCGCTGAATAATTTGCAAGCTACATATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCGCTGCATGTTAAGAACATGGTGCGTAACGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGCTCTGAAGCAACTCTACGACATGGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATTATTAAGAACTATGATATGGCTGAGTATCTGAAACTGGAATTCATGAAGGAAATTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGGTCTTATCTGCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATTGTTCGTGAGACTGCGAAAGCGCCATGA 1002 44.51 MASSSGSSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKEIGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7853491 7859993 + CmaCh16G010200.1 Cma16g01020 311618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01020 333 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 331 - -
Cma16g01020 333 CDD HLD_clamp_RFC 172 234 - -
Cma16g01020 333 Pfam ATPase family associated with various cellular activities (AAA) 52 169 IPR003959 GO:0005524|GO:0016887
Cma16g01020 333 SUPERFAMILY post-AAA+ oligomerization domain-like 236 327 IPR008921 GO:0003677|GO:0006260
Cma16g01020 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 235 IPR027417 -
Cma16g01020 333 CDD AAA 30 167 - -
Cma16g01020 333 PANTHER REPLICATION FACTOR C SUBUNIT 2 7 331 - -
Cma16g01020 333 SMART AAA_5 47 179 IPR003593 -
Cma16g01020 333 Gene3D - 8 172 IPR027417 -
Cma16g01020 333 Gene3D - 173 236 - -
Cma16g01020 333 Gene3D - 237 329 - -
Cma16g01020 333 Pfam Replication factor C C-terminal domain 237 322 IPR013748 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01369 Cma-Chr1:9736991 Cma16g01020 Cma-Chr16:7853491 3.70E-66 dispersed
Cma02g01296 Cma-Chr2:7612932 Cma16g01020 Cma-Chr16:7853491 1.72E-13 dispersed
Cma04g02374 Cma-Chr4:16440418 Cma16g01020 Cma-Chr16:7853491 9.16E-64 dispersed
Cma07g00480 Cma-Chr7:2093288 Cma16g01020 Cma-Chr16:7853491 3.29E-09 dispersed
Cma16g00753 Cma-Chr16:4061930 Cma16g01020 Cma-Chr16:7853491 5.89E-11 dispersed
Cma16g01020 Cma-Chr16:7853491 Cma15g00666 Cma-Chr15:3169342 2.45E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01020 K10755 - csv:101208984 622.083