Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma16g01035 | ATGGAGGGAGGAGAAGGGGATGCCGGAAATGGGGCTACTGCACCAGCAGGATCAAGTCCTCCGAGACCTGAGATGGCAGCTCCGGCACCGGAAGATGGCGGTTTGGTGAGTTCTGCGGCGACGGCGGGGAAGAAGAAGAGGGGAAGACCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGTGGCGGCGCTGTCGCCGAAGCCGTTATCGGCGTCGGCACCTGCACGGTCGGCTGTGATTGATTTCTCGGCGGAGAAACGTGGGAAAGTGCGGCCGGCGAGTTCGTTGAGCAAAACCAAATATGAAACGGAGAATTTAGGTGAATGGGTACCTTGTTCAGTTGGAGCTAATTTCACACCCCATATCATCACCGTCAACACTGGTGAGGACGTTACGATGAAGGTTCTCGCCTTTTCTCAACAAGGACCTCGAGCCATTTGTATTCTCTCTGCTAATGGTGTGATTTCGAGCGTCACTCTTCGTCAACCCGATTCTTCTGGAGGAACGTTAACATATGAGGGTCGTTTTGAGATATTGTCGTTGTCGGGATCGTTCATGCCAAGCGACAATGCGGGAACAAAGAGTAGAACTGGTGGAATGAGTGTCTCCTTAGCAAGCCCAAACGGACGCATTGTTGGTGGCGGAGTTGTTGGTTTGTTAGTAGCTGCAAGTCCTGTTCAAGTGGTAGTAGGAAGCTTTATATTTGGGAACCAACACGAGCAAAAGGCGAAGAAGCCGAAACATGATGTCATATTACCGGTTTCTGTTTTTCCAATTTCGAGTGTTGAACCGAAATCATACATGACAACAACGACGACGACGACAACAACATCTTCCCTTCGTGCTGAAACGTGGACACCTTTAGTTCCAGATTTGAAGAGTCAACCAACTGATATCAATGTATCGTTAACTAGTAGTTAA | 921 | 49.84 | MEGGEGDAGNGATAPAGSSPPRPEMAAPAPEDGGLVSSAATAGKKKRGRPRKYGPDGKLNVAALSPKPLSASAPARSAVIDFSAEKRGKVRPASSLSKTKYETENLGEWVPCSVGANFTPHIITVNTGEDVTMKVLAFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNAGTKSRTGGMSVSLASPNGRIVGGGVVGLLVAASPVQVVVGSFIFGNQHEQKAKKPKHDVILPVSVFPISSVEPKSYMTTTTTTTTTSSLRAETWTPLVPDLKSQPTDINVSLTSS | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 7958211 | 7960836 | + | CmaCh16G010350.1 | Cma16g01035 | 311633 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma16g01035 | 306 | ProSiteProfiles | PPC domain profile profile. | 115 | 260 | IPR005175 | - | |
| Cma16g01035 | 306 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 117 | 234 | - | - | |
| Cma16g01035 | 306 | CDD | DUF296 | 119 | 233 | IPR005175 | - | |
| Cma16g01035 | 306 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 120 | 233 | IPR005175 | - | |
| Cma16g01035 | 306 | Gene3D | - | 120 | 249 | - | - | |
| Cma16g01035 | 306 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 35 | 303 | IPR039605 | GO:0003680 | |
| Cma16g01035 | 306 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Cma16g01035 | 306 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 | 35 | 303 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma15g01173 | Cma16g01035 | CCT | |
| Cma15g01173 | Cma16g01035 | ECH | |
| Cma06g01133 | Cma16g01035 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma16g01035 | Cma-Chr16:7958211 | Cma18g01194 | Cma-Chr18:9477137 | 1.12E-76 | dispersed | |
| Cma14g01978 | Cma-Chr14:13908339 | Cma16g01035 | Cma-Chr16:7958211 | 1.48E-71 | wgd | |
| Cma15g01173 | Cma-Chr15:7425014 | Cma16g01035 | Cma-Chr16:7958211 | 9.35E-124 | wgd | |
| Cma16g01035 | Cma-Chr16:7958211 | Cma02g01510 | Cma-Chr2:8610196 | 5.61E-125 | wgd | |
| Cma16g01035 | Cma-Chr16:7958211 | Cma06g00747 | Cma-Chr6:3781325 | 3.30E-144 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma16g01035 | - | - | csv:116403748 | 474.937 |