Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01039 ATGGCGGATTCCGACGACGCCACCGCCCGAGCTGTCCACCGCCGCTACGAGGGCCTTCTAATGGTCCGTACCAAAGCCCTCAAGGGCAAAGGAGCCTGGTACTGGTCTCACCTCGAACCCCTTTTGCTTAAAAACTCCGATACCGGCTATCCCAAAGCTGTCAAGCTTCGATGCTCCTTATGCGACGCCGTTTTCTCCGCTTCTAACCCTTCTCGCACCGCCTCCGAGCATCTCAAACGTGGGACCTGTTCTAATTTCAACTCCCTCTCCAAAACCCCCTTTATTCCCTCCCCTGTTTCTACTTCCCCTGTTTCTTGTAAGCGGCCCGCCGATGATACCTGCGGCGGCGGCGGCGGGGATTCGTTTTATGACATTTCTCCATTGACGGTGGTGGATCCGTCGGGGGTTTATGGTGGTTCGTTCTCGTCGTTTTTACCTCAACATCAGAATCCACAACAGCCTGTTTTGGTGTTGTCCGGTGGGAAAGAGGATTTGGGGGCTTTGGCTATGTTGGAGAAAAGCGTTAAAAGGCTTAGAACACCAAGAACATCCCCTGGGGTATCATTAAACAAGGCTCAGATTGATTCTGCGCTTGATTTTCTTACAGATTGGGTGTTTGAATCATCTGGGTCAGTCTCAATTTCTAGTTTAGAGCATCCAAAATTCAAGGCGTTCTTGACTCAAGTCGGGTTGCCTTCGATCTCATCAAGGGATTTTGCAAGATTTAGATTGAATTCTAAATACGAAATGGCCAAGGCTGATGTTCATTTGAAAATTACTGATACCATGTTCTTCCAAATCGCCTCAAATGGGTGGAAAACTCATAATCGAGAGCATAAAACTATGGTTCATATGACTCTAAACCTCCCAAATGGGACTAGTTTGTATAGAAAAACTCTGTTTCTCAGCTCTTCTGTTCCTTGTAGCTTTGCAGAGGAAGTTCTTTGGAATACTGTTTCTGAAATTTGTGGAAGCAGCACGGAGAAATGTGTCGGGATCGTGGCTGATAAGTTCGAGGGGAAGACATTGAAGAACTTGGAAGATCAGCATCCATGGCTGGTTAATCTTCCATGTCAATTTCAAGCTTTCAATGATTTGGTTGAGGATTTCATTACAAATCTCCCTTTGTTCAAGAAAGTCACCCAAAACTGTAAAAGGGTAGCTCAGTTCTTCAACTTTGAGTCTAATATCAGAAAGATCTTCCATAGGTATCAATTACAAGAATGTGGCTATACTCGTTTGATATCAATGGGCACTGCTGAAACAGAGGAGATAGAAGCTATGACACTCTTCGGAATGGTCGACGACATACTCGAGTCAGCTCCCGCGATGCAATTAGCCCGGCTCGACGAAGCTTACAAGACGACATCGATGGAGGAGAATTCGATAGCTCGAGAGGTTTCGAACTTAGTTGGGGATTCTACGTTTTGGAATGAAGTGGAAGCTGTTCATTGTTTGATCAAGTTAATGAAGAACATGGCTGATGAGATTGAAACAGAGAGGCCATTAGTAGGACAATGTCTTCCACTTTGGGAAGAATTAAGAGAGAAAGTGAAAGATTGGTGCAAAAAGTTCAAAATCTCAGAAGAATCAATGGAGAATATAGTGTCAATGAGGTTTAAGAAGAATTACCACCCGGCATGGGCGGCGGCGTTCGTGCTCGATCCACTCTATCTTACACGGGACAACACTGGGAAGTACCTCCCGCCGTTCAAACGCTTGACGACAGAGCAAGAGAAGGACGTCGATCGCCTTATAACACGGCTCGTGGCGACGGAGGAAGCTCACATTGTACTAATGGAGCTGATGAAATGGAGAACAGAAGGGCTTGATGAAGTATATGCAAGAGCTGTTCAAATGAAGGAGAAGAATCCCATTACAGGGAAATTAAGAACAGCTAATCCACAGAGCAGTAGGCTTGTATGGGAAACATACTTAACTGATTTCAAATCATTGAGGAAAGTTGCTGTTAGGCTCATTTTTCTTCATGCCACTTCATGTGGGTATAAAAGTAATGCCAATTTTGAAAGAATGATGTGTTCATATGGAAGCTGCTCAAGAGGTGTCGCTGAAGGTGTTAAGAAGTTGGTGTTCATTTCAGCTCGTTCGAAGCTCGAGAAGAGGAATTTTTGTAACGATGACGACAAGAACGACGATGATATCGAGTTGTTTGGAGCGGTAAATAGTGACGATGATCTGCCAAGCGAGGCTGATAGATCATCTTCGTTGTAA 2232 44.98 MADSDDATARAVHRRYEGLLMVRTKALKGKGAWYWSHLEPLLLKNSDTGYPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCSNFNSLSKTPFIPSPVSTSPVSCKRPADDTCGGGGGDSFYDISPLTVVDPSGVYGGSFSSFLPQHQNPQQPVLVLSGGKEDLGALAMLEKSVKRLRTPRTSPGVSLNKAQIDSALDFLTDWVFESSGSVSISSLEHPKFKAFLTQVGLPSISSRDFARFRLNSKYEMAKADVHLKITDTMFFQIASNGWKTHNREHKTMVHMTLNLPNGTSLYRKTLFLSSSVPCSFAEEVLWNTVSEICGSSTEKCVGIVADKFEGKTLKNLEDQHPWLVNLPCQFQAFNDLVEDFITNLPLFKKVTQNCKRVAQFFNFESNIRKIFHRYQLQECGYTRLISMGTAETEEIEAMTLFGMVDDILESAPAMQLARLDEAYKTTSMEENSIAREVSNLVGDSTFWNEVEAVHCLIKLMKNMADEIETERPLVGQCLPLWEELREKVKDWCKKFKISEESMENIVSMRFKKNYHPAWAAAFVLDPLYLTRDNTGKYLPPFKRLTTEQEKDVDRLITRLVATEEAHIVLMELMKWRTEGLDEVYARAVQMKEKNPITGKLRTANPQSSRLVWETYLTDFKSLRKVAVRLIFLHATSCGYKSNANFERMMCSYGSCSRGVAEGVKKLVFISARSKLEKRNFCNDDDKNDDDIELFGAVNSDDDLPSEADRSSSL 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7985007 7987238 + CmaCh16G010390.1 Cma16g01039 311637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01039 743 PANTHER OSJNBA0013A04.12 PROTEIN 4 721 - -
Cma16g01039 743 PANTHER F16P17.2 PROTEIN 4 721 - -
Cma16g01039 743 SUPERFAMILY Ribonuclease H-like 313 671 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01039 - - - csv:101211448 1160.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01167 Cma16g01039 CCT
Cma15g01167 Cma16g01039 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01382 Cma-Chr15:8655223 Cma16g01039 Cma-Chr16:7985007 0 dispersed
Cma15g01167 Cma-Chr15:7400296 Cma16g01039 Cma-Chr16:7985007 0 wgd
Cma16g01039 Cma-Chr16:7985007 Cma02g01507 Cma-Chr2:8597187 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g477 Blo02g01065 . . . Bpe05g00602 . Bma07g01615 Bma14g00563 . Cmo16g01085 . Cma15g01167 Car02g01269 Car15g01056 . Cpe14g00858 . . . . . . . . . . . . . . . . . . . Lsi07g01349 . Chy09g01140 Cme06g02636 . . Bda07g00519 Bda09g00079 Bpe08g01450 Bpe11g00706 . . . Cmo02g01548 Cmo15g01229 . Cma16g01039 . Car16g00989 . . Bhi12g00575 . . . . . . . . . . . . . . Csa03g00324 Chy06g02000 Cme09g01671
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014394 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 0 1 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01039 Cma_Chr16 FPKM 7.136649 7.908872 15.174081 16.083941 4.496025 4.878636 5.356333 29.921574 26.754341 28.609354