Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01040 ATGCATAGAAAGAGCAGAGGGGGCAGGGACGAATTTTTTGATTTTGGTGACCCCTTTGCTGGGTTTGGAGGCTTTCCGGGTCAAAGAAGCTTAATTTCTGGTTTCTTTGGTGGACGGGATCCATTTGATGATCCTTTCTTCAGAAGTCCATTTGGAAGCATGTTTGATTCGAGCTTCCCTGGTGGTCCTCGAATGCCTTTTGCAAGCATGCGTCCATCTGGATTCCTTGATCATCAGGCTCCCGAGCCTAAAAGGCCGAGAGGCCCGATTATTGAGGAAATAAATTCAGATGATGAAAAAGAAGCAGGAAACGAGAGTAAAAATCCAAAGAATTCATCCAAGGAGCCTCTTGTTGAAGACCCTGATGATGAAGAGAATGGGAAAAGACAGTTGCAGCGCATAGATCATCACAGTGGATCAAATCACAGACATATCCGACCTCAAACTAATAGCTTCACATTTCAGAGCTCCTCTGTAACTTATGGAAGCTCGAATGGAACATATTATACTTCATCAAGAACAAGAAGGGCAGGAAGTGATGGTGTGGTTTTTGAAGAAAGCAAGGAAGCTGATACGGCAAGCAGACAGGCAACCCATAAAGTTTCAAGAGGACTCCATAATAAGGGTCATTCAGTTACAAGGAAACTGAATCCTGATGGTAAGGTGGATACCATGCAAACTTTGCATAATCTTAATGGAGATGAGCTAGACAGTTTTGAAAATGCTTGGGCAAGGAATGCAGGAAGTTTGCCTGGGTGGCCTGGGAGTACAAGCGGCTTTGATAGTATTGCTGGTGGCATTTGCCAAAACGGTCAAACAAGCAGAGGTGGGTTGGCACTTCCCTCCACTCAGCATCATCCTCAAGCGACTGGAAGGACAGCCGTGGAAGGCTGGAGTAACCCGGGTTCCTCACGCGCACAGCAAGTGAACAGGAGTAGGAAAGATGCAAGGGACAAGACGACGATATTGACTCTTCATTCCCTCCAATACGTCCACATCGTTCCAAACAGTGAGAGAACAGAGGAGGAAGATGAGTTCAACAGAGCAACCCCAAGTAGTTGTACGGATGACGGAGCAAAGCACCACCCGACGCCGCTCCACCTACATTCTCACGGCGGAGATGAGATTCTTCCCAAACGCTCCACCAAGAAACGCCTGGAGCCAGTGGCTTCCGTCGGCGACGGTGGATCGGTGTCCTGCAGCAAGTGCAGGCCACATGCTCGAGAAAAGTTCTCTGTGGTTCCGGTGGATTACAATGGCGTCGCCAAGCAGTTTTTCTCAATGGCGAGTCCTAATGGAATATTGAAATCCATTGTGTCGTCGTTCACAGGAAAAAGCCCTAAATCGATGAAGGAAGGAGCGGATTGGGCGGTGAGAGAAGAGCACTGGAAAATCGCTTTCGGCGAAGTTTCGCATAAACTGATTGAAGCGACGAGGAAAAGAGATGAAGCGATTCTTGAAGCTTCGAGGCTGAAATATTCCATGGCGGAATTGGAGAAGAAACTCAATAAACTCGAAATCTATTGCCATAGTTTGAAGTCCGAGCTCTATAAATGCGTTTCAAATCCGCGAAACCCTAACCTAGAAGTTCCAACGAACAGCGATTCGATTTCAGACAAAATAATCGAGAATTTCTTATCATCCGTTTCCGAATCTCGATCGTCCATGAGGCAGTTAAGCCGATCACTAGCGATGCAACTCCATCACATCGGAGACAAAATCTACGAGAGGATTCAATTCCTCCTCCGATCTCACGATATCAAAATATCTCTCTCGAAAAACAGTAAAACCTCACTAATCTTCCATCTCGAAGCGATTCTAAACAGAGCATTCTTCGAGGATTTCGAATCGATAGGGTTTCAGAAGAACTCACCGAATCAGATCCTGAATCCCTCGGATCGGACGGAATCGAACATCGCGTCGTTCAATCGCCTCCACCGGCTGAGTTGGGAGGAAGTTTTAGGCAAAGGAACGAGGCATTTCAGCGAGGATTTCAGCAGATTCTGCGACCGGAAGATGAGCGACATTATTGCGATGCTTGAGTGGAACAGAGCATGGCCGGAGCCGCTACTGCAGGCGTTCTTCATGGCAGCGAAGAGCGTTTGGCTTGTTCATCTTCTCGCCACAGCCGTTCACCCGAGCTTGCCGATATTCAGAGTGGATTCGGGCGTGAGATTCGACGGCGTTTACATGGAAGACATTGCAGGTGACAAAGCCAGAGAACTGGCTCCGGCGACGGTGAGAATAATGGTGGCGCCGGGATTTTATGCGTTTGATGGGTTGATCAAGTGTAAGGTTACGTGTAGGTACCACACTAATCTTAATAATTAA 2331 47.45 MHRKSRGGRDEFFDFGDPFAGFGGFPGQRSLISGFFGGRDPFDDPFFRSPFGSMFDSSFPGGPRMPFASMRPSGFLDHQAPEPKRPRGPIIEEINSDDEKEAGNESKNPKNSSKEPLVEDPDDEENGKRQLQRIDHHSGSNHRHIRPQTNSFTFQSSSVTYGSSNGTYYTSSRTRRAGSDGVVFEESKEADTASRQATHKVSRGLHNKGHSVTRKLNPDGKVDTMQTLHNLNGDELDSFENAWARNAGSLPGWPGSTSGFDSIAGGICQNGQTSRGGLALPSTQHHPQATGRTAVEGWSNPGSSRAQQVNRSRKDARDKTTILTLHSLQYVHIVPNSERTEEEDEFNRATPSSCTDDGAKHHPTPLHLHSHGGDEILPKRSTKKRLEPVASVGDGGSVSCSKCRPHAREKFSVVPVDYNGVAKQFFSMASPNGILKSIVSSFTGKSPKSMKEGADWAVREEHWKIAFGEVSHKLIEATRKRDEAILEASRLKYSMAELEKKLNKLEIYCHSLKSELYKCVSNPRNPNLEVPTNSDSISDKIIENFLSSVSESRSSMRQLSRSLAMQLHHIGDKIYERIQFLLRSHDIKISLSKNSKTSLIFHLEAILNRAFFEDFESIGFQKNSPNQILNPSDRTESNIASFNRLHRLSWEEVLGKGTRHFSEDFSRFCDRKMSDIIAMLEWNRAWPEPLLQAFFMAAKSVWLVHLLATAVHPSLPIFRVDSGVRFDGVYMEDIAGDKARELAPATVRIMVAPGFYAFDGLIKCKVTCRYHTNLNN 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7993215 8000853 - CmaCh16G010400.1 Cma16g01040 311638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01040 776 MobiDBLite consensus disorder prediction 274 309 - -
Cma16g01040 776 MobiDBLite consensus disorder prediction 144 177 - -
Cma16g01040 776 MobiDBLite consensus disorder prediction 78 142 - -
Cma16g01040 776 PANTHER CYCLIN-DEPENDENT KINASE-LIKE PROTEIN 327 772 IPR042316 -
Cma16g01040 776 Coils Coil 481 515 - -
Cma16g01040 776 MobiDBLite consensus disorder prediction 274 317 - -
Cma16g01040 776 MobiDBLite consensus disorder prediction 179 196 - -
Cma16g01040 776 MobiDBLite consensus disorder prediction 65 221 - -
Cma16g01040 776 MobiDBLite consensus disorder prediction 360 376 - -
Cma16g01040 776 Pfam Myelodysplasia-myeloid leukemia factor 1-interacting protein 91 245 IPR019376 -
Cma16g01040 776 MobiDBLite consensus disorder prediction 337 376 - -
Cma16g01040 776 PANTHER CYCLIN-DEPENDENT KINASE-LIKE PROTEIN 327 772 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01040 - - - csv:101204074 728.013
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00752 Cma16g01040 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01231 Cma-Chr2:7244972 Cma16g01040 Cma-Chr16:7993215 3.31E-79 dispersed
Cma16g01040 Cma-Chr16:7993215 Cma20g00369 Cma-Chr20:1795803 7.51E-08 dispersed
Cma06g00752 Cma-Chr6:3807191 Cma16g01040 Cma-Chr16:7993215 0 transposed
Cma17g00034 Cma-Chr17:149337 Cma16g01040 Cma-Chr16:7993215 2.40E-58 transposed
Cma15g01165 Cma-Chr15:7385938 Cma16g01040 Cma-Chr16:7993215 1.39E-175 wgd
Cma16g01040 Cma-Chr16:7993215 Cma02g01505 Cma-Chr2:8587960 4.21E-162 wgd
Cma16g01040 Cma-Chr16:7993215 Cma06g00751 Cma-Chr6:3800354 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g479 Blo02g01062 Blo03g00178 Bda06g00051 Bda08g00558 Bpe05g00600 . . . Cmo06g00775 Cmo16g01088 . . . . . Cpe14g00860 . . . . . . . . . . . . . . . Cone8ag0364 Cone12ag0355 Cone6ag0714 Cone9ag0714 Lsi07g01347 . . Cme06g02634 . . . . . . Bma05g00781 Bma12g00140 . . . Cma06g00752 Cma16g01040 Car06g00673 Car16g00991 Cpe08g00767 . . . . . . . . . . . . . . . . Csa03g00322 Chy06g02002 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001682 2 1 3 4 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 3 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01040 Cma_Chr16 FPKM 31.785805 35.265289 52.378582 55.462318 29.752512 28.353958 31.44075 106.611389 108.360466 107.826775